View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3095_high_14 (Length: 352)
Name: NF3095_high_14
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_high_14 |
 | |
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| [»] scaffold0391 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 33953505 - 33953180
Alignment:
| Q |
11 |
cacagataccagttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttc |
110 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
33953505 |
cacagataccaattggtaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttc |
33953406 |
T |
|
| Q |
111 |
aaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
210 |
Q |
| |
|
|||||||| | |||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33953405 |
aaaagccagtattgtgttacacatgtagagagatagttttttcagattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
33953306 |
T |
|
| Q |
211 |
aggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaa |
310 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
33953305 |
aggttctgtaaagaaccgagaagctcaatgttgttcagtttagaaggatggaaatcgtagtttgtgattatcagaactcttagtttactcatttttgcaa |
33953206 |
T |
|
| Q |
311 |
tccactcgggtaatgagtactgcttg |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33953205 |
tccactcgggtaatgagtactgcttg |
33953180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 33976106 - 33975781
Alignment:
| Q |
11 |
cacagataccagttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
33976106 |
cacagataccagtttgcaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttc |
33976007 |
T |
|
| Q |
111 |
aaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
210 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||| |
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|
| T |
33976006 |
aaaagccagtattgtgttacacatgtacagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttcc |
33975907 |
T |
|
| Q |
211 |
aggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaa |
310 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
33975906 |
aggttctgtaaagaaccgagaagctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgcaa |
33975807 |
T |
|
| Q |
311 |
tccactcgggtaatgagtactgcttg |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33975806 |
tccactcgggtaatgagtactgcttg |
33975781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 33960811 - 33960486
Alignment:
| Q |
11 |
cacagataccagttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttc |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
33960811 |
cacagataccagttggaaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttgcaaatgcatctgaaattaggatgctacccttttc |
33960712 |
T |
|
| Q |
111 |
aaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
210 |
Q |
| |
|
|||||||| | |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||| |
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|
| T |
33960711 |
aaaagccagtattgtgttacacatgtagagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttcc |
33960612 |
T |
|
| Q |
211 |
aggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaa |
310 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
33960611 |
aggttctgtaaagaaccgagaagctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgcaa |
33960512 |
T |
|
| Q |
311 |
tccactcgggtaatgagtactgcttg |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33960511 |
tccactcgggtaatgagtactgcttg |
33960486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 33993025 - 33992700
Alignment:
| Q |
11 |
cacagataccagttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
33993025 |
cacagataccagtttgcaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttc |
33992926 |
T |
|
| Q |
111 |
aaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
210 |
Q |
| |
|
|||||||| | |||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||| || |||| ||||||| ||||||| ||||| |
|
|
| T |
33992925 |
aaaagccagtattgtgttacacatgtagagagatagttttttcagattcttcaatgtgccgaaggaagggaccaaaattcgctctagtctgattttttcc |
33992826 |
T |
|
| Q |
211 |
aggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaa |
310 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||| || | | |||||||||||||||||||||||||| | |||||||||||||||||||||| | |
|
|
| T |
33992825 |
aggttctgtaaagaaccgagaagctcaaagttgttcagttcacatggatggaaactgtagtttgtgattataagaacttttagtttactcatttttttga |
33992726 |
T |
|
| Q |
311 |
tccactcgggtaatgagtactgcttg |
336 |
Q |
| |
|
|| |||| || |||||||| |||||| |
|
|
| T |
33992725 |
tcgactcaggaaatgagtattgcttg |
33992700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 33914313 - 33914123
Alignment:
| Q |
25 |
ggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttcaaaagccattcttg |
124 |
Q |
| |
|
|||||| |||||| ||| ||| | ||||||||| |||| ||||||| || ||||| ||||||||||||| ||||| ||||||||||||| | ||||| |
|
|
| T |
33914313 |
ggcaatgccaccatatccttggaataatcaatgctcaaatcttctaaattaggaaacaaatctgaaattaggatgctacccttttcaaaagctagtcttg |
33914214 |
T |
|
| Q |
125 |
tattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggtt |
215 |
Q |
| |
|
||||||||||||| || |||| |||| | | |||||||| |||||| ||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
33914213 |
tattacacatgtagagggataattttttgagattcttcattgtgccaaaggaaggaacagaaatccgctctagcctgattcttttcaggtt |
33914123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 257
Target Start/End: Complemental strand, 33943012 - 33942798
Alignment:
| Q |
43 |
ttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttcaaaagccattcttgtattacacatgtacagag |
142 |
Q |
| |
|
||||| ||||| ||| |||| ||||||| || |||||| || ||||||||| |||| ||||||||||||| | |||||||||||||||||| || | |
|
|
| T |
33943012 |
ttgcaataatccatgctcaaatcttctaaattaggaaataagtcggaaattaggatgctgcccttttcaaaagcgagtcttgtattacacatgtagaggg |
33942913 |
T |
|
| Q |
143 |
atagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttttgtaaagaaccaagaagctcaatgtt |
242 |
Q |
| |
|
||| |||| | | ||||||||||||||| ||||||||||| |||||| ||||| |||||||||| ||||| |||||| | ||| ||||||| || |
|
|
| T |
33942912 |
ataattttttaagattcttcaatgtgccaaaggaaggaacagaaatcctctctagcctgattcttttaaggttggataaagagctaagtagctcaagatt |
33942813 |
T |
|
| Q |
243 |
gttcaatttagaagg |
257 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
33942812 |
gttcagttcagaagg |
33942798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 13069 - 12775
Alignment:
| Q |
11 |
cacagataccagttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgctatccttttc |
110 |
Q |
| |
|
|||| |||||||| || ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
13069 |
cacatataccagtaggaaatctcaccatatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggacgctacccttttc |
12970 |
T |
|
| Q |
111 |
aaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttcc |
210 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||||||| |||| ||||| | ||| |||| || | |
|
|
| T |
12969 |
gaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttc |
12870 |
T |
|
| Q |
211 |
aggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttt |
305 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||| |||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12869 |
aggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
12775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 8277341 - 8277572
Alignment:
| Q |
98 |
tgctatccttttcaaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaa |
197 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
8277341 |
tgctacccatttcaaaagtcattcttgtattacacatgtagacagataattttctcagattcttcaatgtgtcgagggatggaacggaaatccgctctaa |
8277440 |
T |
|
| Q |
198 |
tctgattctttccaggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagttta |
297 |
Q |
| |
|
||||| ||||| ||||| |||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8277441 |
tctgactctttttaggttctgtagagaa-------gctcaatgttattcagtttagaaggatggaaactgtagtttgtgattatcagaacttttagttta |
8277533 |
T |
|
| Q |
298 |
ctcatttttgcaatccactcgggtaatgagtactgcttg |
336 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8277534 |
ctcatttttgcaatccactcggttaatgagtactgcttg |
8277572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 8275934 - 8276012
Alignment:
| Q |
23 |
ttggcaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttggaaatgcatctgaaattaggctgct |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
8275934 |
ttggcaataccaccaaatctttgcaggaatcaatgttcaattcttcaggatttggaaatgcatctgaaattaggatgct |
8276012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 305
Target Start/End: Original strand, 6742778 - 6742977
Alignment:
| Q |
106 |
ttttcaaaagccattcttgtattacacatgtacagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattc |
205 |
Q |
| |
|
||||||||||| | |||||||| ||||| | || | |||||||| || |||||||||| ||| ||| |||| || ||| | ||| ||||| ||| |
|
|
| T |
6742778 |
ttttcaaaagcattccttgtattgcacatatgaagggttagttttcgcagattcttcaatttgcacaagcaagggactgaaaccttctccaatcttatta |
6742877 |
T |
|
| Q |
206 |
tttccaggttttgtaaagaaccaagaagctcaatgttgttcaatttagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttt |
305 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||| ||| | |||| |||| ||||||||| || ||||||| ||| | |||||| ||||| |||||||| |
|
|
| T |
6742878 |
ttttcaggtttgataaagaaccaagtagctcaaacttggtgaattcagaacgatggaaaccataatttgtgactattaaaactttcagtttgctcatttt |
6742977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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