View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_high_21 (Length: 250)

Name: NF3095_high_21
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_high_21
NF3095_high_21
[»] chr6 (39 HSPs)
chr6 (15-250)||(26805181-26805417)
chr6 (17-250)||(27674823-27675057)
chr6 (35-215)||(27662640-27662820)
chr6 (17-215)||(25547695-25547892)
chr6 (15-182)||(27590373-27590541)
chr6 (17-218)||(25513587-25513787)
chr6 (31-216)||(27715764-27715949)
chr6 (31-233)||(27681654-27681856)
chr6 (17-214)||(26145713-26145909)
chr6 (32-218)||(25485702-25485888)
chr6 (32-218)||(28795121-28795307)
chr6 (35-216)||(26851224-26851405)
chr6 (35-233)||(26886806-26887004)
chr6 (31-233)||(27608384-27608586)
chr6 (15-233)||(27695838-27696057)
chr6 (109-227)||(26658685-26658803)
chr6 (109-227)||(26764656-26764774)
chr6 (35-216)||(27601991-27602172)
chr6 (31-143)||(26649263-26649375)
chr6 (31-143)||(26755231-26755343)
chr6 (32-216)||(31287293-31287477)
chr6 (17-217)||(26058632-26058831)
chr6 (17-217)||(26078602-26078801)
chr6 (31-218)||(26961823-26962010)
chr6 (32-217)||(25582420-25582605)
chr6 (31-219)||(26638113-26638301)
chr6 (31-219)||(26744079-26744267)
chr6 (32-214)||(25076609-25076791)
chr6 (32-143)||(28789172-28789283)
chr6 (31-140)||(26952408-26952517)
chr6 (32-88)||(25491406-25491462)
chr6 (32-141)||(26876363-26876472)
chr6 (109-218)||(26980121-26980230)
chr6 (33-143)||(26625919-26626029)
chr6 (33-143)||(26731896-26732006)
chr6 (35-141)||(26826678-26826784)
chr6 (171-223)||(26649183-26649235)
chr6 (171-223)||(26755151-26755203)
chr6 (171-217)||(26952331-26952377)
[»] chr8 (2 HSPs)
chr8 (32-233)||(22023973-22024174)
chr8 (31-233)||(29271103-29271305)
[»] scaffold0277 (2 HSPs)
scaffold0277 (32-233)||(1953-2154)
scaffold0277 (32-143)||(10916-11027)
[»] scaffold0349 (1 HSPs)
scaffold0349 (31-216)||(15996-16181)
[»] scaffold0419 (1 HSPs)
scaffold0419 (32-233)||(10232-10433)
[»] chr1 (5 HSPs)
chr1 (17-212)||(265580-265776)
chr1 (32-209)||(28124889-28125066)
chr1 (32-143)||(28129920-28130031)
chr1 (35-140)||(26138790-26138895)
chr1 (170-227)||(28130058-28130115)
[»] chr4 (15 HSPs)
chr4 (26-141)||(18686913-18687028)
chr4 (26-141)||(18696707-18696822)
chr4 (26-141)||(18721378-18721493)
chr4 (26-141)||(18676864-18676979)
chr4 (32-141)||(18728806-18728915)
chr4 (26-87)||(18652782-18652843)
chr4 (26-141)||(18726298-18726412)
chr4 (26-130)||(18682066-18682170)
chr4 (176-216)||(18682171-18682211)
chr4 (172-216)||(18687059-18687103)
chr4 (176-216)||(18726447-18726487)
chr4 (176-212)||(18728950-18728986)
chr4 (176-214)||(18721528-18721566)
chr4 (176-216)||(18677014-18677054)
chr4 (172-212)||(18696853-18696893)
[»] chr2 (1 HSPs)
chr2 (34-141)||(17990414-17990521)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 26805417 - 26805181
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagatt 113  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26805417 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagctcttttagatt 26805318  T
Q  114 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26805317 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaa 26805218  T
Q  214 ttgttatttgataactctagttcttcaacattaacac 250  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26805217 ttgttgtttgataactctagttcttcaacattaacac 26805181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 27674823 - 27675057
Alignment:
Q  17 tagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcg 115  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||   | ||| |||||| |||| ||||| |    
T  27674823 tagtgcaataaaaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcggaaagctctttaagatttg 27674922  T
Q  116 gtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    |||||||||||||||||||||||||||| | |||||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27674923 gtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaattttgaaatt 27675022  T
Q  216 gttatttgataactctagttcttcaacattaacac 250  Q
    ||||| |||||| |||||   ||| ||||||||||    
T  27675023 gttatgtgataagtctagcaattccacattaacac 27675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 27662640 - 27662820
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||||||||||||    
T  27662640 aacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatccttctgcataaagatttgttagattgggtggaatccctctaatttc 27662739  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    |||||||||    ||||||  ||||| |||||||| ||||| ||||||||||||||| ||||  |||||||||||||||||    
T  27662740 ctcaagagactcacagtaatccaaataaagatgctcaagatagtgacattcactaaggcacttgggaagaattttgaaatt 27662820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 25547892 - 25547695
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  25547892 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttgg 25547794  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    ||||||||||||||||||||||||| |  ||||||    ||||| ||| || ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  25547793 tggaatccctctaatttcctcaagaaaattgcagttcttcaaataaagttgtttaagatggtgacattcgctaaggcactcaggaagaattgtgaaatt 25547695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 27590373 - 27590541
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagatt 113  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |  |||  || |||||  |||||    
T  27590373 tatagtgcaataaaaaacaacaacaaacctgattcattaacattcttctacttgatgaactcaatgattcacatccataagcatcaaccacttcaagatt 27590472  T
Q  114 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgaca 182  Q
     |||||||||||||||||||||||||||||| |||| | | |||||| || |||  |||||||||||||    
T  27590473 tggtggaatccctctaatttcctcaagagatttgcaatcatacaaattaatatgactaagatggtgaca 27590541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 25513787 - 25513587
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  25513787 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttgg 25513689  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||||||||||   ||||  |   ||||| ||||||||||||| ||||| |||||| ||| ||||| ||||||||| ||||||||    
T  25513688 tggaatccctctaatttcctcaagagccttgcaaaacttcaaataaagatgcttaagacggtgatattcaccaaggcactcgggaagaattgtgaaattg 25513589  T
Q  217 tt 218  Q
    ||    
T  25513588 tt 25513587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 27715764 - 27715949
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| ||||  || | |||||||||| ||||||||||||||||    
T  27715764 caacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaa 27715863  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||| ||   ||||||   || || ||  |    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  27715864 tttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattg 27715949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 27681856 - 27681654
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   |   ||| ||||| |||||||||| ||||||||||||||||    
T  27681856 caacaactaacctgactcattaacattcttctacttgaggaactcaatgatttacaatatctagcacaaagctcttttagatttggtggaatccctctaa 27681757  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||||||||||   |||| |   || || ||  |    ||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||||| ||    
T  27681756 tttcctcaagagactcgcagcacatcacattaatttcaacaagatggtgacattcacgaaggcactcaggaagaattttgaaattgctaaatgataagtc 27681657  T
Q  231 tag 233  Q
    |||    
T  27681656 tag 27681654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 26145909 - 26145713
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  26145909 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcacaaagcctttcaagatttgg 26145811  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    ||||||||||||||||||||||||||    |||  |   ||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||| ||||||    
T  26145810 tggaatccctctaatttcctcaagagcctcgcaaaacttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaat 26145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 25485888 - 25485702
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||| | |||  | | |||| |||||  ||  ||||| |||||||||||||||||    
T  25485888 aacaacaaacctgactcattaacattcttatacttgaggaattcaatgaataacactcgtttgcaaaaagcctttcaagatttggtggaatccctctaat 25485789  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    |||||||||||   |||| |    ||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||    
T  25485788 ttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaattgtt 25485702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 28795307 - 28795121
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||  ||  ||||| |||||||||||||||||    
T  28795307 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccctctaat 28795208  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    |||||| |||||  |||||| |  |||   ||| |  |||||| ||| |||||||||||| |||||||||| || ||||||||||||    
T  28795207 ttcctcgagagacttgcagttatccaatctaaggttattaagaaggtaacattcactaaggcactcaggaataaatttgaaattgtt 28795121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 26851405 - 26851224
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||| ||  ||  |||||| ||    |||||||||||||||||||||||||||||    
T  26851405 aacaaacctgactcaataacattcttctgcttgaggaactcaatgatttgcaatctattgcagacaggtaatttagattcggtggaatccctctaatttc 26851306  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||| |  |||||  | ||||  |||| | | ||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  26851305 ctcaagaaaattgcagccatacaatacaagctccctaagacggtgacattcactaaggcactcgggaagaatttttaaattg 26851224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 26887004 - 26886806
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| |  |||  |   ||||||||  |||| ||||| ||||| ||||||||||||||    
T  26887004 aacaaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttatagcagaaaggtctttaagatttggtggtatccctctaatttc 26886905  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactctag 233  Q
    |||||||||  |||| | |  ||| |||||   | ||||| ||||||||||  |||| ||||| |||||||||||||||||||| |||||||| |||||    
T  26886904 ctcaagagacttgcaatgattcaattcaagtatcctaagaaggtgacattccttaaggcactcgggaagaattttgaaattgttctttgataagtctag 26886806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 27608384 - 27608586
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||| |   ||||||||||  ||| ||||| ||||||||||||||||    
T  27608384 caacaactaacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccctctaa 27608483  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||||||| ||   |||||    || |  ||   |   ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||    
T  27608484 tttcctcaagggactcgcagtccctcacagtaattagaacaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatatgataagtc 27608583  T
Q  231 tag 233  Q
    |||    
T  27608584 tag 27608586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 27695838 - 27696057
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcactt-ttagat 112  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |  ||| | || ||||   ||||    
T  27695838 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacatgatgaactcaatgatttgcattcataagcatagag-acttccaagat 27695936  T
Q  113 tcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    | |||||||||||||||||||||||||| ||  |||||||   || |  ||  | |  ||||||||||| ||||||||| ||||| ||||||||||||||    
T  27695937 ttggtggaatccctctaatttcctcaagggacttgcagtacctcacaataatttccacaagatggtgactttcactaaggcactctggaagaattttgaa 27696036  T
Q  213 attgttatttgataactctag 233  Q
    || | ||| |||||| |||||    
T  27696037 atcgctatatgataaatctag 27696057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 26658803 - 26658685
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    |||||| |||||||||||||||||||||||||| ||  ||| | |  ||||| ||||||||||||| |||||||||||||||| ||||| || |||||||    
T  26658803 agattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattt 26658704  T
Q  209 tgaaattgttatttgataa 227  Q
    |||||||||| ||||||||    
T  26658703 tgaaattgttctttgataa 26658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 26764774 - 26764656
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    |||||| |||||||||||||||||||||||||| ||  ||| | |  ||||| ||||||||||||| |||||||||||||||| ||||| || |||||||    
T  26764774 agattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattt 26764675  T
Q  209 tgaaattgttatttgataa 227  Q
    |||||||||| ||||||||    
T  26764674 tgaaattgttctttgataa 26764656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 27601991 - 27602172
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttaca-tccttctgcagaaagcacttttagattcggtggaatccctctaattt 133  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||| ||||  ||  | ||| ||||| ||||||| |||||||||||    
T  27601991 aacaaacctgactcaataacattcttctacttgaggaactcaatgattcacagtcctt-tgcatgaaatattttaagatttggtggaaaccctctaattt 27602089  T
Q  134 cctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||| |  |||||  |  || || ||  |  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27602090 cctcaagaaacttgcagccatccacataaatgtttttaagaaggtgacattcactaaggcactcaggaagaattttgaaattg 27602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 26649375 - 26649263
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||    ||||||||||  ||| ||||| ||||||||||| ||||    
T  26649375 caacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaa 26649276  T
Q  131 tttcctcaagaga 143  Q
    |||||||||||||    
T  26649275 tttcctcaagaga 26649263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 26755343 - 26755231
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||    ||||||||||  ||| ||||| ||||||||||| ||||    
T  26755343 caacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaa 26755244  T
Q  131 tttcctcaagaga 143  Q
    |||||||||||||    
T  26755243 tttcctcaagaga 26755231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 31287477 - 31287293
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||   |  || |||||| |||  ||||| |||||||||||||||||    
T  31287477 aacaacaaacctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcggaaagctcttcaagatttggtggaatccctctaat 31287378  T
Q  132 ttcctcaagagatgtgcagtaagacaaatc-aagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||  ||||  ||   || || ||||| ||| | | ||||||||||| |||||||||| |||||||| |||||||||    
T  31287377 ttcctcaagagacttgcaacaatcgaattcaaagat-cttcataaggtgacattcattaagacactcgggaagaatattgaaattg 31287293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 26058831 - 26058632
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| ||    
T  26058831 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttgg 26058733  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| ||||||||    
T  26058732 tggaatccctctaatttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattg 26058633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 26078801 - 26078602
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| ||    
T  26078801 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttgg 26078703  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| ||||||||    
T  26078702 tggaatccctctaatttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattg 26078603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 26962010 - 26961823
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||||||| || | |||||||||||    |||||||||||| |||||    ||||||||||  |   ||||| ||||||||||||||||    
T  26962010 caacaacaaacctgactcaatagccttcttctactttccaaactcaatgattcacatctcaatgcagaaagccgtccaagatttggtggaatccctctaa 26961911  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    ||||||||||| |  |||||| |  |||  |||| | |  |||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  26961910 tttcctcaagaaacttgcagtcatccaacacaagctccccaagacggtgacattcactaaggcactcgggaagaattttgaaattgtt 26961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 25582605 - 25582420
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| |||||||||||||||||    
T  25582605 aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctctaat 25582506  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgt 217  Q
    |||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| |||||||||    
T  25582505 ttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattgt 25582420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 26638301 - 26638113
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctcta 129  Q
    ||||||||||||||||||| || | ||||||||||||| ||||||||||| |  ||| |   |||||| ||| | ||| ||||| |||||||||||||||    
T  26638301 caacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaattt-agatttggtggaatccctcta 26638203  T
Q  130 atttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtta 219  Q
    ||||| |||||||   |||| | |  ||||| |||   | ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  26638202 atttcttcaagagccttgcattcatccaaattaaggatcctaagaaggtgacatacactaaggcactcaggaagaattttgaaattgtta 26638113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 26744267 - 26744079
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctcta 129  Q
    ||||||||||||||||||| || | ||||||||||||| ||||||||||| |  ||| |   |||||| ||| | ||| ||||| |||||||||||||||    
T  26744267 caacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaattt-agatttggtggaatccctcta 26744169  T
Q  130 atttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtta 219  Q
    ||||| |||||||   |||| | |  ||||| |||   | ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  26744168 atttcttcaagagccttgcattcatccaaattaaggatcctaagaaggtgacatacactaaggcactcaggaagaattttgaaattgtta 26744079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 25076791 - 25076609
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||| || |||||||||||||||||  ||| ||||||| || |||| |  || ||| ||||| | | ||||| |||||||||| |||||    
T  25076791 aacaacaaacctgacccaataacattcttctacttgtggaattcaatgaattgcatcttattgtagacaagcaatat-agattgggtggaatccatctaa 25076693  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    |||| |||||||    ||| |||  ||| | ||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  25076692 tttcttcaagagcccagcaataatccaatttaagatccttaagatggcgacattcactaaggcactcgggaagaattttgaaat 25076609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 28789283 - 28789172
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||||| |||||   ||||||||||  |   ||||| |||||||||||||||||    
T  28789283 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaat 28789184  T
Q  132 ttcctcaagaga 143  Q
    |||||| |||||    
T  28789183 ttcctccagaga 28789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 26952517 - 26952408
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||| || |  ||  || ||||||||||   || ||||||||||||||||||||| |    
T  26952517 caacaacaaacctgactcaatagcattcttctacttgcggaactcaacgactcgcaatctactgcagaaagtctttctagattcggtggaatccctctga 26952418  T
Q  131 tttcctcaag 140  Q
    ||||||||||    
T  26952417 tttcctcaag 26952408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 25491406 - 25491462
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatc 88  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  25491406 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcatc 25491462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 26876472 - 26876363
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||| || | |||||||||||||||||||| | |||||||||  |||     ||||||||||  || || ||| |||||||||||||||||    
T  26876472 aacaacaaacctgtctaaataacattcttctacttgatggattcaatgattcgcattgccttgcagaaagcctttctatatttggtggaatccctctaat 26876373  T
Q  132 ttcctcaaga 141  Q
    ||||||||||    
T  26876372 ttcctcaaga 26876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 26980230 - 26980121
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    ||||| ||||||| ||||||||||||||||||| |  |||||  |  |||  |||| |||  |||||||||||||||| |||| |||||||| |||||||    
T  26980230 agatttggtggaaaccctctaatttcctcaagaaacttgcagccatccaatacaagctgccgaagatggtgacattcattaaggcactcaggtagaattt 26980131  T
Q  209 tgaaattgtt 218  Q
    ||||||||||    
T  26980130 tgaaattgtt 26980121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 26626029 - 26625919
Alignment:
Q  33 acaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||   ||| |   |||||| ||| | ||| ||||| |||||||||||||||||    
T  26626029 acaacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaattt-agatttggtggaatccctctaat 26625931  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  26625930 ttcctcaagaga 26625919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 26732006 - 26731896
Alignment:
Q  33 acaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||   ||| |   |||||| ||| | ||| ||||| |||||||||||||||||    
T  26732006 acaacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaattt-agatttggtggaatccctctaat 26731908  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  26731907 ttcctcaagaga 26731896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 26826784 - 26826678
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    |||||||||| |||| || ||||||| |||||||| |||||||||||| |||||||  |||||| |     | |||||| ||||||||||||||||| ||    
T  26826784 aacaaacctggctcaatagcattcttatacttgataaactcaatgattcacatcctattgcagagaaattgtatagattgggtggaatccctctaatctc 26826685  T
Q  135 ctcaaga 141  Q
    |||||||    
T  26826684 ctcaaga 26826678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 26649235 - 26649183
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgttatttg 223  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  26649235 aagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttg 26649183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 26755203 - 26755151
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgttatttg 223  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  26755203 aagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttg 26755151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 26952377 - 26952331
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgt 217  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  26952377 aagatggtggcattcactaaggcactcgggaagaattttgaaattgt 26952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 22024174 - 22023973
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||  ||||||||||  ||  ||||| |||||||||||||||||    
T  22024174 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaat 22024075  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactct 231  Q
    |||||||| |||| |||||  |  ||||| ||||  |  || | ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||    
T  22024074 ttcctcaacagatttgcagcgatccaaattaagaacccaaacaaggtgacattcattaaggcactcgggaagaattttgaaattgttattcgataagtct 22023975  T
Q  232 ag 233  Q
    ||    
T  22023974 ag 22023973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 29271103 - 29271305
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||   |||  |||||||| |||||||||| ||||||||||||||||    
T  29271103 caacaactaacctgactcattaacattcttttacttgaggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccctctaa 29271202  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||| ||||||   ||||  |  || || ||  |  | ||||||| ||||||||||||| |||||||||||||||||||||| ||||  |||||| ||    
T  29271203 tttccttaagagaatggcagccactcatattaattttataaagatggagacattcactaaggcactcaggaagaattttgaaatagttaaatgataagtc 29271302  T
Q  231 tag 233  Q
    |||    
T  29271303 tag 29271305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 1953 - 2154
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||| ||  ||||| |||||||||||||||||    
T  1953 aacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcagaaagcatttcaagatttggtggaatccctctaat 2052  T
Q  132 ttcctcaagagatgtgcagtaagacaa-atcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||| |||||  |||||| |  ||| || | |||  |||||| |||||||||||||||| |||||||||| || |||||||||||||| |||||| ||    
T  2053 ttcctccagagacttgcagttatccaatataaggat-attaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttatatgataagtc 2151  T
Q  231 tag 233  Q
    |||    
T  2152 tag 2154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 10916 - 11027
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||||| |||||   ||||||||||  |   ||||| |||||||||||||||||    
T  10916 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaat 11015  T
Q  132 ttcctcaagaga 143  Q
    |||||| |||||    
T  11016 ttcctccagaga 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 16181 - 15996
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| ||||  || | |||||||||| ||||||||||||||||    
T  16181 caacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaa 16082  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||| ||   ||||||   || || ||  |    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  16081 tttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattg 15996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 10433 - 10232
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||  ||  ||||| |||| ||||||||||||    
T  10433 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaat 10334  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactct 231  Q
    |||||| |||||  |||||| |  |||   ||| |  |||||| |||||||||||||||| |||||||||| || ||||||||||||  ||||||| |||    
T  10333 ttcctccagagacttgcagttatccaatataaggttattaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttccttgataagtct 10234  T
Q  232 ag 233  Q
    ||    
T  10233 ag 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 265580 - 265776
Alignment:
Q  17 tagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcg 115  Q
    |||||||||||||  ||||||||||||||||||| |||||||||| ||||||| ||||||||||| || ||| | |  ||| ||||| |||| ||||| |    
T  265580 tagtgcaataaaaaacaacaacaaacctgactcaataacattcttttacttgaggaactcaatgagttgcattcatacgcaaaaagctctttaagatttg 265679  T
Q  116 gtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    |||||||||||||||||||||||||| |  ||||||||  ||  | ||  |    ||||||||||||||||||||| |||||||||||| |||||||    
T  265680 gtggaatccctctaatttcctcaagatacttgcagtaactcacgttaattttaacaagatggtgacattcactaaggcactcaggaagagttttgaa 265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 28124889 - 28125066
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||| |||| || ||||||||||| ||| ||| | ||||||| |||||    |||||||| |  |||||| || |||||||||||||||||    
T  28124889 aacaacaaacctggctcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccattttaggtttggtggaatccctctaat 28124988  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaatttt 209  Q
    ||||||||||||  |||||| |  |||   |||   ||| ||| |||||||||||||||||||||| |||||||||||    
T  28124989 ttcctcaagagacttgcagtcatccaatctaaggacctttagaaggtgacattcactaagacactcgggaagaatttt 28125066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 28129920 - 28130031
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||| ||| ||| | ||||||| |||||    |||||||| |  |||||| || ||||||| |||||||||    
T  28129920 aacaacaaacctgactcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccgttttaggtttggtggaaaccctctaat 28130019  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  28130020 ttcctcaagaga 28130031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 26138895 - 26138790
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||| ||| ||| ||| ||| ||||||| || |||  |  |||||||| |  ||||||||| |||||||||||| |||||||    
T  26138895 aacaaacctgactcaataacatccttatacatgaggaagtcaatgacttgcattgtattgcagaaaacttttttagatttggtggaatccctttaatttc 26138796  T
Q  135 ctcaag 140  Q
    ||||||    
T  26138795 ctcaag 26138790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 28130058 - 28130115
Alignment:
Q  170 taagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataa 227  Q
    ||||||||||||||||| |||||||||| |||| || ||| | |||||||| ||||||    
T  28130058 taagatggtgacattcattaagacactccggaataacttttatattgttatctgataa 28130115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18686913 - 18687028
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  | | ||||  |||   ||| |||||||||||||||||    
T  18686913 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatatttgagattcggtggaatccc 18687012  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18687013 tctaatttcctcaaga 18687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18696707 - 18696822
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  | ||||  |||   ||| ||||||||||||| |||    
T  18696707 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatcgatatgcatcaagatatttgagattcggtggaagccc 18696806  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18696807 tctaatttcctcaaga 18696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18721378 - 18721493
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||  |||   |||   ||| ||||||||||||| |||    
T  18721378 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacattctaatgcttcaagatatttgagattcggtggaaaccc 18721477  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18721478 tctaatttcctcaaga 18721493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18676864 - 18676979
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |  |||   ||    ||| ||||||||||||| |||    
T  18676864 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatcttaatgcttcaaaatatttgagattcggtggaaaccc 18676963  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18676964 tctaatttcctcaaga 18676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 18728806 - 18728915
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |   ||||  |||   ||| ||||||||||||| |||||||||    
T  18728806 aacaacaaacctgactcaataacattcttctagttgaggaactcaatgatttacattcaaatgcatcaagacatttgagattcggtggaaaccctctaat 18728905  T
Q  132 ttcctcaaga 141  Q
    ||||||||||    
T  18728906 ttcctcaaga 18728915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 18652782 - 18652843
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacat 87  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18652782 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacat 18652843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18726298 - 18726412
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| |||||||||||||||||||  || || |||||| |||| |||||||||||||||||||||  ||||  |||   ||| ||||||||||||| |||    
T  18726298 aaaaacaacaacaaacctgactcaacaaaat-cttctatttgaggaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccc 18726396  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18726397 tctaatttcctcaaga 18726412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 18682066 - 18682170
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| |||||||||||||||||||  |||||||||||| ||||  ||||||||||||||||||||  ||||  |||   ||| ||||||||||||| |||    
T  18682066 aaaaacaacaacaaacctgactcaacaacattcttctatttgagcaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccc 18682165  T
Q  126 tctaa 130  Q
    |||||    
T  18682166 tctaa 18682170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18682171 - 18682211
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  18682171 ggtgacattcactaaggcactcgggaagaattttgaaattg 18682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 18687059 - 18687103
Alignment:
Q  172 agatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||| |||||||||||||||| ||||| ||||||||||||||||||    
T  18687059 agaaggtgacattcactaaggcactcgggaagaattttgaaattg 18687103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18726447 - 18726487
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  18726447 ggtgacattcactaaggcactcgggaagaattttgaaattg 18726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 18728950 - 18728986
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaa 212  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18728950 ggtgacattcactaaggcactcaggaagaattttgaa 18728986  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 18721528 - 18721566
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  18721528 ggtgacattcattaaggcactcaggaagaattttgaaat 18721566  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18677014 - 18677054
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||| |||| ||||| ||||||||||||||||||    
T  18677014 ggtgacattcattaaggcactcgggaagaattttgaaattg 18677054  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 18696853 - 18696893
Alignment:
Q  172 agatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    ||| |||||||||||||||| ||||| ||||||||||||||    
T  18696853 agaaggtgacattcactaaggcactcgggaagaattttgaa 18696893  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 17990414 - 17990521
Alignment:
Q  34 caacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaattt 133  Q
    |||||||||||||| | ||| |||||||||||||| ||| |||||||||| ||  ||  |||||| |    ||  |||||||||||||||||| ||||||    
T  17990414 caacaaacctgactaagtaaaattcttctacttgaggaaatcaatgatttgcactctattgcagatattttttcaagattcggtggaatccctttaattt 17990513  T
Q  134 cctcaaga 141  Q
    ||||||||    
T  17990514 cctcaaga 17990521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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