View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_high_4 (Length: 423)
Name: NF3095_high_4
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 39216400 - 39215996
Alignment:
| Q |
1 |
tcgatcttgtatatattatgcattatctataccgattgagctaagatattttcattgatacttaaaactattcaatctttacaaaaataaaaattagata |
100 |
Q |
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| T |
39216400 |
tcgatcttgcatatattatgcattttctctaccaactgagctaagatattttcagtgatacttaaaactattcaatctttacaaaaataaaaattagata |
39216301 |
T |
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| Q |
101 |
agcggaggcatgcccccaatttaatacatttgtatatgtccttggacatatctgatacacttaattttcnnnnnnngttaagaggtataaacttatcctt |
200 |
Q |
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| T |
39216300 |
agcggaggcatgcccccaatttaatacatttgtatatgtccttggacatatctgatacacttagttttctttttttgttaagaggtataaacttatcctt |
39216201 |
T |
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| Q |
201 |
nnnnnnnn-gtataaatttataatatttcattaggtaacaactcaataatatatatgagaacatcaaagaaaatgtgagcactaatgtcacatctcgtgc |
299 |
Q |
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| T |
39216200 |
aaaaaaaaagtataaatttataatatttcattaggtaacaactcaataatatat--gagaacatcaaagaaaatgtgagcacgaatgtcacatctcgtgc |
39216103 |
T |
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| Q |
300 |
taagtaacaatttagtgtctaaagtttttataatccatgcacacatcacaaacacgcgctctctcatacacatatagtggacatatttgcataaaataca |
399 |
Q |
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| T |
39216102 |
taagtaacaatttagtgtctaaagtttttataatccatgcacacatcacaaacacgcgcgctctcatacacatatagtggacatatttgcataaaataca |
39216003 |
T |
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| Q |
400 |
cacttat |
406 |
Q |
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| T |
39216002 |
cacttat |
39215996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 39215836 - 39215691
Alignment:
| Q |
209 |
gtataaatttataatatttcattaggtaacaactcaataatatatatgagaacatcaaagaaaatgtgagcactaatgtcacatctcgtgctaagtaaca |
308 |
Q |
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||||||||||||| ||||||||||||||||||| ||||| | ||||| ||||||||| |||||||||||| |||||||||||| || ||||| ||||| |
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| T |
39215836 |
gtataaatttatagcatttcattaggtaacaacttaataacacatatgggaacatcaatgaaaatgtgagctctaatgtcacatttcatgctatataaca |
39215737 |
T |
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| Q |
309 |
atttagtgtctaaagtttttataatccatgcacacatcacaaacac |
354 |
Q |
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| T |
39215736 |
acatggcgcctaaagtttttataatccatgcacacatcacaaacac |
39215691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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