View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_1 (Length: 444)

Name: NF3095_low_1
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_1
NF3095_low_1
[»] chr4 (26 HSPs)
chr4 (93-185)||(30071299-30071391)
chr4 (338-432)||(30071572-30071666)
chr4 (18-70)||(30071248-30071300)
chr4 (130-190)||(45472455-45472514)
chr4 (118-184)||(8847921-8847987)
chr4 (118-184)||(11180890-11180957)
chr4 (118-184)||(24303827-24303893)
chr4 (118-184)||(26097675-26097742)
chr4 (117-171)||(40849710-40849764)
chr4 (118-171)||(28116880-28116932)
chr4 (118-190)||(52620621-52620693)
chr4 (140-184)||(36190083-36190127)
chr4 (118-169)||(49125528-49125579)
chr4 (118-184)||(23628818-23628884)
chr4 (118-177)||(26111362-26111420)
chr4 (130-177)||(40665517-40665563)
chr4 (118-184)||(41144329-41144396)
chr4 (119-184)||(20681179-20681244)
chr4 (130-184)||(22556960-22557013)
chr4 (134-184)||(43117517-43117567)
chr4 (374-432)||(44555810-44555868)
chr4 (118-169)||(18138319-18138369)
chr4 (140-177)||(55991824-55991861)
chr4 (130-170)||(8654352-8654391)
chr4 (117-171)||(10137920-10137973)
chr4 (140-184)||(34264656-34264700)
[»] chr8 (15 HSPs)
chr8 (118-184)||(38137743-38137809)
chr8 (118-184)||(36059300-36059366)
chr8 (118-184)||(38139295-38139361)
chr8 (118-184)||(39525435-39525502)
chr8 (135-184)||(39486052-39486101)
chr8 (130-177)||(6816028-6816074)
chr8 (118-184)||(37034808-37034874)
chr8 (122-177)||(44908484-44908538)
chr8 (118-171)||(26518832-26518885)
chr8 (130-171)||(169742-169782)
chr8 (140-177)||(1922394-1922431)
chr8 (140-177)||(11924773-11924810)
chr8 (135-171)||(1877615-1877651)
chr8 (146-190)||(12261488-12261532)
chr8 (374-410)||(32467881-32467917)
[»] chr7 (13 HSPs)
chr7 (118-190)||(43111017-43111089)
chr7 (122-184)||(4492458-4492521)
chr7 (129-184)||(44651906-44651961)
chr7 (118-190)||(16933487-16933559)
chr7 (118-190)||(16938870-16938942)
chr7 (118-177)||(5526089-5526149)
chr7 (118-184)||(4406651-4406717)
chr7 (118-190)||(20135094-20135166)
chr7 (118-184)||(4400089-4400155)
chr7 (118-184)||(36769207-36769274)
chr7 (130-184)||(4615388-4615441)
chr7 (130-184)||(20482275-20482328)
chr7 (134-171)||(41343357-41343394)
[»] chr6 (11 HSPs)
chr6 (118-184)||(34247779-34247846)
chr6 (118-184)||(6833535-6833601)
chr6 (118-171)||(29976298-29976351)
chr6 (118-184)||(173086-173153)
chr6 (122-184)||(17505473-17505536)
chr6 (118-184)||(29859393-29859459)
chr6 (118-184)||(34207027-34207094)
chr6 (118-184)||(6018598-6018664)
chr6 (118-171)||(20791531-20791583)
chr6 (140-184)||(28472227-28472271)
chr6 (140-184)||(32244383-32244427)
[»] chr5 (19 HSPs)
chr5 (118-184)||(40506826-40506892)
chr5 (118-171)||(43396501-43396555)
chr5 (118-184)||(2530067-2530133)
chr5 (130-184)||(10042787-10042840)
chr5 (118-184)||(28746342-28746408)
chr5 (374-428)||(31811984-31812038)
chr5 (134-184)||(42111833-42111883)
chr5 (140-177)||(32261746-32261783)
chr5 (122-184)||(789050-789112)
chr5 (118-184)||(790085-790151)
chr5 (118-184)||(27176500-27176566)
chr5 (122-184)||(29874692-29874754)
chr5 (118-184)||(42416782-42416848)
chr5 (118-171)||(8314810-8314864)
chr5 (146-184)||(16166316-16166354)
chr5 (140-190)||(28990957-28991007)
chr5 (130-171)||(19270899-19270940)
chr5 (118-171)||(39803890-39803942)
chr5 (140-172)||(42322880-42322912)
[»] scaffold0768 (1 HSPs)
scaffold0768 (118-184)||(6327-6393)
[»] scaffold0198 (1 HSPs)
scaffold0198 (118-184)||(15285-15351)
[»] chr2 (13 HSPs)
chr2 (118-184)||(34912636-34912702)
chr2 (118-184)||(3243319-3243385)
chr2 (118-171)||(40202199-40202253)
chr2 (122-184)||(3079705-3079768)
chr2 (130-177)||(36078587-36078633)
chr2 (134-184)||(10120610-10120660)
chr2 (374-432)||(27678975-27679033)
chr2 (374-432)||(44809979-44810037)
chr2 (118-171)||(4631194-4631246)
chr2 (122-171)||(7274660-7274708)
chr2 (374-407)||(18491516-18491549)
chr2 (119-184)||(35423772-35423837)
chr2 (140-184)||(9799349-9799393)
[»] chr1 (10 HSPs)
chr1 (118-184)||(43119138-43119204)
chr1 (118-184)||(24473575-24473642)
chr1 (118-184)||(1322549-1322615)
chr1 (118-184)||(36952737-36952803)
chr1 (118-184)||(46040510-46040576)
chr1 (374-433)||(52596385-52596444)
chr1 (140-177)||(11754259-11754296)
chr1 (140-177)||(33818125-33818162)
chr1 (140-177)||(33877593-33877630)
chr1 (135-184)||(34652276-34652325)
[»] chr3 (18 HSPs)
chr3 (118-184)||(12101488-12101553)
chr3 (374-434)||(32582349-32582408)
chr3 (118-185)||(13337085-13337151)
chr3 (118-184)||(39721244-39721310)
chr3 (130-184)||(35690236-35690289)
chr3 (118-184)||(48961104-48961170)
chr3 (118-184)||(54113397-54113463)
chr3 (140-177)||(48545116-48545153)
chr3 (118-169)||(38361735-38361786)
chr3 (118-184)||(46090142-46090208)
chr3 (140-177)||(7040888-7040925)
chr3 (140-185)||(42617766-42617811)
chr3 (135-184)||(43316540-43316589)
chr3 (135-180)||(54195710-54195755)
chr3 (140-184)||(14587411-14587455)
chr3 (135-171)||(20849441-20849477)
chr3 (117-184)||(47719467-47719535)
chr3 (130-170)||(53022664-53022703)
[»] scaffold0244 (1 HSPs)
scaffold0244 (130-184)||(7598-7651)
[»] scaffold0024 (1 HSPs)
scaffold0024 (130-171)||(90498-90538)
[»] scaffold0178 (1 HSPs)
scaffold0178 (140-184)||(7316-7360)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 30071299 - 30071391
Alignment:
Q  93 tgttattgcattataatttttatatgaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttta 185  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||  |||| |||||||    
T  30071299 tgttattgcattataatttttatatgaaccccgaacacaccaaaaataataataaatttaaagttttgtacgatattttgccaaacaacttta 30071391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 30071572 - 30071666
Alignment:
Q  338 aaagtgaaccattaccaagctagtcnnnnnnnagccaatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagacccta 432  Q
    |||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  30071572 aaagtgaaccattaccaagctagtcttttttagccaaatgagcttatatgacataagctataaactcaaaaacatgtcttaccaaacagacccta 30071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30071248 - 30071300
Alignment:
Q  18 ttaactattataaatgtacggtgaaatataatattctctgaaaaataattttg 70  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30071248 ttaactattataaatgtatggtgaaatataatattctctgaaaaataattttg 30071300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 45472514 - 45472455
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    ||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| ||||    
T  45472514 caccaaaaa-aataataaattcaaagttttgtacaatattttgccaaataactttagaact 45472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 8847921 - 8847987
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  8847921 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 8847987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 11180890 - 11180957
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||  |||| ||||||    
T  11180890 gaaccccggacactaccaaaaaaaataataaattcaatgttttgtacaatattttgccaaacaacttt 11180957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 24303893 - 24303827
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| |||||||  |||||||||||    
T  24303893 gaaccccgtacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaataacttt 24303827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 26097742 - 26097675
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  26097742 gaaccccgaacaccaccaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 26097675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 40849710 - 40849764
Alignment:
Q  117 tgaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||||||||  | |||| |||||||||||||||||||||||| |||||||    
T  40849710 tgaaccccggacaccactaaaaaaataataaattcaaagttttgtacaatatttt 40849764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 28116932 - 28116880
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||    
T  28116932 gaaccccggacaccacaaaaa-aataataaattcaaagttttgtacaatatttt 28116880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 52620621 - 52620693
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||| |||||||| |||||||| ||||||||||||| |||||||||| |||||||  |||||||||||| ||||    
T  52620621 gaactccggacaccaccaaaaa-aataataaattcagagttttgtacaatattttgccaaataactttagaact 52620693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 36190127 - 36190083
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  36190127 aataataaattcaaagttttgtacaatattttgtcaaacaacttt 36190083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 49125528 - 49125579
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatatt 169  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  49125528 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatatt 49125579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 23628818 - 23628884
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||| |||||||  |||| ||||||    
T  23628818 gaaccccggacaccaccaaaga-aataataaattcaaagttttgtacaatattttgccaaacaacttt 23628884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 26111362 - 26111420
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    ||||||| |||||  |||||| |||||||||||||||||||||||| ||||||| |||||    
T  26111362 gaaccccagacaccacaaaaa-aataataaattcaaagttttgtacaatattttgtcaaa 26111420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 40665517 - 40665563
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  40665517 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaa 40665563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 41144396 - 41144329
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||  |||||||  |||| ||||||    
T  41144396 gaactccggacaccaccaaaaaaaataataaattcaaagttttgtataatattttgccaaacaacttt 41144329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 20681179 - 20681244
Alignment:
Q  119 aaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||| ||||||||| |||||||||||||| |||| |||| |||||||| |||| ||||||    
T  20681179 aaccccggacaccaccaaaaa-aataataaattcaatgtttcgtacaatattttaccaaacaacttt 20681244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 22556960 - 22557013
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  22556960 caccaaaaa-aataataaattcaaagttttgtaaaatattttgtcaaacaacttt 22557013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 43117517 - 43117567
Alignment:
Q  134 aaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  43117517 aaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 43117567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 44555810 - 44555868
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagacccta 432  Q
    |||||||||| | |||||||||||||| |||||||  |||| |||| ||||||||||||    
T  44555810 aatgagcttaaaagacataagctataagctcaaaattatgtcttaccaaacagacccta 44555868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 18138319 - 18138369
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatt 169  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  18138319 gaaccccggacaccaccaaaaa--ataataaattcaaagttttgtacaatatt 18138369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 55991824 - 55991861
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  55991824 aataataaattcaaagttttgtacaatattttgtcaaa 55991861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 8654391 - 8654352
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattt 170  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  8654391 caccaaaaa-aataataaattcaaagttttgtacaatattt 8654352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 10137973 - 10137920
Alignment:
Q  117 tgaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||||||| ||||| ||||||||  ||||||||||||||||||||||| |||||||    
T  10137973 tgaaccccagacaccaccaaaaa--ataataaattcaaagttttgtacaatatttt 10137920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 34264700 - 34264656
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||    
T  34264700 aataataaattcaaagttttgtacaatattttgccaaacaacttt 34264656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 38137809 - 38137743
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  38137809 gaaccccggacaccacaaaaaaaataataaattcaaagttttgtacaatattttatcaaacaacttt 38137743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 36059366 - 36059300
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  36059366 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 36059300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 38139295 - 38139361
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  38139295 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 38139361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 39525435 - 39525502
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| || ||||||||||||||||||||||||||| || |||||||  |||| ||||||    
T  39525435 gaaccccggacaccactaaaaataataataaattcaaagttttgcacaatattttgccaaacaacttt 39525502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 39486101 - 39486052
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||||||||||||||||||| |||||||  |||| ||||||    
T  39486101 aaaataataataaattcaaagttttgtacaatattttgccaaacaacttt 39486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 6816028 - 6816074
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  6816028 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaa 6816074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 37034808 - 37034874
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  37034808 gaacaccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 37034874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 44908484 - 44908538
Alignment:
Q  122 cccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||  |||||| |||||||||||||||||||||||| ||||||| |||||    
T  44908484 cccggacaccacaaaaa-aataataaattcaaagttttgtacaatattttgtcaaa 44908538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 26518885 - 26518832
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||    
T  26518885 gaaccccagacaccaccaaaaa-aataataaattcaaagttttgtacaatatttt 26518832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 169782 - 169742
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  169782 caccaaaaa-aataataaattcaaagttttgtacaatatttt 169742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 1922394 - 1922431
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  1922394 aataataaattcaaagttttgtacaatattttgtcaaa 1922431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 11924773 - 11924810
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  11924773 aataataaattcaaagttttgtacaatattttgtcaaa 11924810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 1877651 - 1877615
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||| |||||||||||||||||||||||| |||||||    
T  1877651 aaaaaaataataaattcaaagttttgtacaatatttt 1877615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 12261532 - 12261488
Alignment:
Q  146 aaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||||||||||||||||| ||||||| ||||| |||||| |||||    
T  12261532 aaattcaaagttttgtacaatattttgtcaaacaactttttaact 12261488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 32467881 - 32467917
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaac 410  Q
    |||||||||||| |||||||||||||| |||||||||    
T  32467881 aatgagcttataagacataagctataagctcaaaaac 32467917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 43111017 - 43111089
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| ||||    
T  43111017 gaaccccggacatcaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaataactttagaact 43111089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 4492521 - 4492458
Alignment:
Q  122 cccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||||||||||    
T  4492521 cccggacaccaccaaaaaaaataataaattcaaagttttgtacaatattttgccaaataacttt 4492458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 44651961 - 44651906
Alignment:
Q  129 acaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  44651961 acaccacaaaaaataataaattcaaagttttgtacaatattttatcaaacaacttt 44651906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 16933559 - 16933487
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||||||| |||| |||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  16933559 gaaccccgaacaccaccaaaaa-aataataaattcaatgttttgtacaatattttgtcaaataactttagaact 16933487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 16938942 - 16938870
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||||||| |||| |||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  16938942 gaaccccgaacaccaccaaaaa-aataataaattcaatgttttgtacaatattttgtcaaataactttagaact 16938870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 5526089 - 5526149
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||||    
T  5526089 gaaccccggacaccacgaaaaaaaataataaattcaaagttttgtacaatattttgtcaaa 5526149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 4406717 - 4406651
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  4406717 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 4406651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 20135166 - 20135094
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||  |||| |||||| |||||    
T  20135166 gaaccccggacaccaccaaaaa-aatattaaattcaaagttttgtacaatattttgccaaacaactttttaact 20135094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 4400155 - 4400089
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| ||||| |||||||| |||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  4400155 gaaccccagacaccaccaaaaa-aatattaaattcaaagttttgtacaatattttgtcaaacaacttt 4400089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 36769207 - 36769274
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||||  ||||||  |||| ||||||    
T  36769207 gaaccccggacaccaccaaaaaaaataataaatttaaagttttgtactttattttgccaaacaacttt 36769274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 4615388 - 4615441
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  4615388 caccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 4615441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 20482275 - 20482328
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  20482275 caccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 20482328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 41343394 - 41343357
Alignment:
Q  134 aaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41343394 aaaaaaaataataaattcaaagttttgtacaatatttt 41343357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 34247846 - 34247779
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  34247846 gaaccccggacaccacgaaaaaaaataataaattcaaagttttgtacaatattttttcaaacaacttt 34247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 6833535 - 6833601
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  6833535 gaaccccggacaccacaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 6833601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 29976298 - 29976351
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| |||||||    
T  29976298 gaaccccggacacaccaacaaaaataataaatttaaagttttgtacaatatttt 29976351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 173153 - 173086
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||  ||||||| ||||| ||||||    
T  173153 gaaccccggacaccaccaaaaaaaataataaatacaaagttttgtataatattttgtcaaacaacttt 173086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 17505473 - 17505536
Alignment:
Q  122 cccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||| ||| |||||||||||||||||||  ||||||||||||| ||||||    
T  17505473 cccggacaccaccaaaaaaaattataaattcaaagttttgtataatattttatcaaacaacttt 17505536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 29859393 - 29859459
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||| ||||| ||||||    
T  29859393 gaaccccggacaccaccaaaaa-aataataaattcaaagttttatacaatattttgtcaaacaacttt 29859459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 34207094 - 34207027
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||  |||| ||||||    
T  34207094 gaaccccggacaccaccaaaaaaaataataaattcaaaattttgtacaatatttttccaaacaacttt 34207027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 6018664 - 6018598
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||  |||| ||||||    
T  6018664 gaaccccggacaccaccaaaaa-aataataaatttaaagttttgtacaatattttgccaaacaacttt 6018598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 20791531 - 20791583
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||| |||||  |||||| |||||||||||||||||||||||| |||||||    
T  20791531 gaaccccagacaccacaaaaa-aataataaattcaaagttttgtacaatatttt 20791583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 28472227 - 28472271
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||    
T  28472227 aataataaattcaaagttttgtacaatattttgccaaacaacttt 28472271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 32244383 - 32244427
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||    
T  32244383 aataataaattcaaagttttgtacaatattttgccaaacaacttt 32244427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 40506892 - 40506826
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  40506892 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaacaacttt 40506826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 43396501 - 43396555
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  43396501 gaaccccggacaccacaaaaaataataataaattcaaagttttgtacaatatttt 43396555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 2530067 - 2530133
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  2530067 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 2530133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 10042787 - 10042840
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  10042787 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaacaacttt 10042840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 28746408 - 28746342
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||| |||||||  |||| ||||||    
T  28746408 gaaccccggacaccacaaaaaaaataataaattcaaagttttatacaatattttgccaaacaacttt 28746342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 31812038 - 31811984
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagac 428  Q
    |||||||||||| |||||||||||||| || |||||||||| |||| ||||||||    
T  31812038 aatgagcttataagacataagctataagctaaaaaacatgtcttaccaaacagac 31811984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 42111883 - 42111833
Alignment:
Q  134 aaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||||||||| |||||||  |||| ||||||    
T  42111883 aaaaataataataaattcaaagttttgtacaatattttgccaaacaacttt 42111833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 32261783 - 32261746
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32261783 aataataaattcaaagttttgtacaatattttatcaaa 32261746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 789112 - 789050
Alignment:
Q  122 cccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  789112 cccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 789050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 790151 - 790085
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||| |||| |||||||| ||||||||||||| |||||||||| ||||||| ||||| ||||||    
T  790151 gaaccccgaacaccaccaaaaa-aataataaattcatagttttgtacaatattttttcaaacaacttt 790085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 27176566 - 27176500
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||  |||||| ||||    
T  27176566 gaaccccagacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaatagcttt 27176500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 29874754 - 29874692
Alignment:
Q  122 cccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||| |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  29874754 cccggacaccaccaaaaa-aataataaattcaaagttttgtataatattttgtcaaacaacttt 29874692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 42416782 - 42416848
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||| | ||| ||||||    
T  42416782 gaacctcggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgtgaaacaacttt 42416848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 8314810 - 8314864
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||  |||||||    
T  8314810 gaaccccggacaccacgaaaaaaaataataaattcaaagttttgtataatatttt 8314864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 16166354 - 16166316
Alignment:
Q  146 aaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  16166354 aaattcaaagttttgtacaatattttgtcaaataacttt 16166316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 28991007 - 28990957
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataactttataact 190  Q
    |||||||||||||||||||||||| |||||||  |||| |||||| |||||    
T  28991007 aataataaattcaaagttttgtacaatattttgccaaacaactttttaact 28990957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 19270899 - 19270940
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  19270899 caccaaaaaaaataataaattcaaagttttgtataatatttt 19270940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 39803942 - 39803890
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||| ||||||||| | |||| |||||||||||||||||||||||| |||||||    
T  39803942 gaactccggacacaaccaaaa-aataataaattcaaagttttgtacaatatttt 39803890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 42322880 - 42322912
Alignment:
Q  140 aataataaattcaaagttttgtacgatatttta 172  Q
    |||||||||||||||||||||||| ||||||||    
T  42322880 aataataaattcaaagttttgtacaatatttta 42322912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 6393 - 6327
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  6393 gaaccccggacaccacaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 6327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 15351 - 15285
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  15351 gaaccccagacacaacaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 34912636 - 34912702
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  34912636 gaaccccggacaccacaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 34912702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 3243385 - 3243319
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  3243385 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 3243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 40202199 - 40202253
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||    
T  40202199 gaaccccggacaccaccaaaaaaaataataaatttaaagttttgtacaatatttt 40202253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 3079705 - 3079768
Alignment:
Q  122 cccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||| |||||||||||||||||||||| | |||||||  |||| ||||||    
T  3079705 cccggacaccaccaaaaaaaataataaattcaaagttttgtgcaatattttgccaaacaacttt 3079768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 36078633 - 36078587
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaa 177  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  36078633 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaa 36078587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 10120610 - 10120660
Alignment:
Q  134 aaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  10120610 aaaaaaaataataaatttaaagttttgtacaatattttgtcaaacaacttt 10120660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 27679033 - 27678975
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagacccta 432  Q
    |||||||||||| |||||||||||||| |||||||| |||| || | ||||| ||||||    
T  27679033 aatgagcttataagacataagctataagctcaaaaatatgtcttgccaaacacacccta 27678975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 44809979 - 44810037
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagacccta 432  Q
    |||||||||||| |||||| ||||||| ||| ||||||||  |||| ||||||||||||    
T  44809979 aatgagcttataagacataggctataagctcgaaaacatgccttaccaaacagacccta 44810037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 4631194 - 4631246
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||||||| ||||  |||||| |||||||||||||||||||||||| |||||||    
T  4631194 gaaccccgaacaccacaaaaa-aataataaattcaaagttttgtacaatatttt 4631246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 7274660 - 7274708
Alignment:
Q  122 cccggacacaccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||||||||  |||||| |||||||||||||||||||||||| |||||||    
T  7274660 cccggacaccacaaaaa-aataataaattcaaagttttgtacaatatttt 7274708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 18491549 - 18491516
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaa 407  Q
    |||||||||||| |||||||||||||||||||||    
T  18491549 aatgagcttataagacataagctataaactcaaa 18491516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 35423772 - 35423837
Alignment:
Q  119 aaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||  |||||| ||||||||||| |||||||||||| | |||||  |||| ||||||    
T  35423772 aaccccggacaccacaaaaaaaataataaatttaaagttttgtacaacattttgccaaacaacttt 35423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 9799393 - 9799349
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||| ||| ||||||| ||||| ||||||    
T  9799393 aataataaattcaaagttttatacaatattttgtcaaacaacttt 9799349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 43119204 - 43119138
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  43119204 gaaccccggacaccacaaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 43119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 24473642 - 24473575
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  24473642 gaaccccggacaccacccaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 24473575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 1322615 - 1322549
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||||||| |||||||| |||| ||||||    
T  1322615 gaaccccagacaccaccaaaaa-aataataaattcaatgttttgtacaatattttaccaaacaacttt 1322549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 36952803 - 36952737
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  36952803 gaaccccagacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 36952737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 46040576 - 46040510
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||  |||| ||||||    
T  46040576 gaaccccggacaccaccaaaaa-aataataaattcaaaattttgtacaatattttgccaaacaacttt 46040510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 52596385 - 52596444
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagaccctat 433  Q
    ||||||||||||  |||| | |||||| ||||||||||||| |||| |||||||||||||    
T  52596385 aatgagcttataacacattatctataagctcaaaaacatgtcttaccaaacagaccctat 52596444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 11754296 - 11754259
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  11754296 aataataaattcaaagttttgtacaatattttgtcaaa 11754259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 33818162 - 33818125
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  33818162 aataataaattcaaagttttgtacaatattttgtcaaa 33818125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 33877630 - 33877593
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  33877630 aataataaattcaaagttttgtacaatattttgtcaaa 33877593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 34652276 - 34652325
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||| ||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  34652276 aaaaaaataataaattcaaaattttgtacaatattttgtcaaacaacttt 34652325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 12101553 - 12101488
Alignment:
Q  118 gaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||| ||||| ||||||    
T  12101553 gaaccccggacaccaccaaaaa--ataataaattcaaagttttgtacaatattttgtcaaacaacttt 12101488  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 32582408 - 32582349
Alignment:
Q  374 aatgagcttatatgacataagctataaactcaaaaacatgtattactaaacagaccctatg 434  Q
    |||||||||||| ||||||||||||||  |||||||||||| |||| ||||||||||||||    
T  32582408 aatgagcttataagacataagctataag-tcaaaaacatgtcttaccaaacagaccctatg 32582349  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 13337085 - 13337151
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttta 185  Q
    ||||||| |||||  |||||| ||||||||||||||||||||||||||||||||  |||| |||||||    
T  13337085 gaaccccagacaccacaaaaa-aataataaattcaaagttttgtacgatattttgccaaacaacttta 13337151  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 39721244 - 39721310
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  39721244 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatattttgccaaacaacttt 39721310  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 35690289 - 35690236
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  35690289 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaacaacttt 35690236  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 48961104 - 48961170
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||| | |||| |||||||||||||||||||||||  ||||||| ||||| ||||||    
T  48961104 gaaccccggtcacaactaaaaaaataataaattcaaagttttgtataatattttgtcaaacaacttt 48961170  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 54113397 - 54113463
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||| |||||  |||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  54113397 gaacccctgacaccacaaaaaaaataataaatttaaagttttgtacaatattttgtcaaacaacttt 54113463  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 48545116 - 48545153
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||||||||||| |||||    
T  48545116 aataataaattcaaagttttgtacgatattttgtcaaa 48545153  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 38361735 - 38361786
Alignment:
Q  118 gaaccccggaca-caccaaaaataataataaattcaaagttttgtacgatatt 169  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  38361735 gaaccccggacaccaccaaaaa-aataataaattcaaagttttgtacaatatt 38361786  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 46090208 - 46090142
Alignment:
Q  118 gaaccccggacacaccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||| ||||  | |||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  46090208 gaaccccgaacaccactaaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 46090142  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 7040888 - 7040925
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  7040888 aataataaattcaaagttttgtacaatattttgtcaaa 7040925  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 42617811 - 42617766
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttta 185  Q
    ||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  42617811 aataataaatttaaatttttgtacaatattttatcaaacaacttta 42617766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 43316589 - 43316540
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||| |||||||||||||||||||||||| |||||||  |||| ||||||    
T  43316589 aaaaaaataataaattcaaagttttgtacaatattttgccaaacaacttt 43316540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 54195755 - 54195710
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatattttatcaaataa 180  Q
    |||| ||||||||||||||| |||||||| ||||||| ||||||||    
T  54195755 aaaaaaataataaattcaaaattttgtacaatattttgtcaaataa 54195710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 14587455 - 14587411
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||    
T  14587455 aataataaattcaaagttttgtacaatattttgccaaacaacttt 14587411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 20849477 - 20849441
Alignment:
Q  135 aaaataataataaattcaaagttttgtacgatatttt 171  Q
    |||| |||||||||||||||||||||||| |||||||    
T  20849477 aaaaaaataataaattcaaagttttgtacaatatttt 20849441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 47719467 - 47719535
Alignment:
Q  117 tgaaccccggacac-accaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||| ||||||| | |||||| |||||||||||||||||||||||  |||||||  |||| ||||||    
T  47719467 tgaacctcggacaccatcaaaaaaaataataaattcaaagttttgtataatattttgccaaacaacttt 47719535  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 53022664 - 53022703
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattt 170  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  53022664 caccaaaaa-aataataaattcaaagttttgtacaatattt 53022703  T

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Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 7651 - 7598
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  7651 caccaaaaa-aataataaattcaaagttttgtacaatattttgtcaaacaacttt 7598  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 90538 - 90498
Alignment:
Q  130 caccaaaaataataataaattcaaagttttgtacgatatttt 171  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  90538 caccaaaaa-aataataaattcaaagttttgtacaatatttt 90498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 7360 - 7316
Alignment:
Q  140 aataataaattcaaagttttgtacgatattttatcaaataacttt 184  Q
    |||||||||||||||||||||||| |||||||  |||||| ||||    
T  7360 aataataaattcaaagttttgtacaatattttgccaaatagcttt 7316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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