View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_low_10 (Length: 384)
Name: NF3095_low_10
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 143 - 368
Target Start/End: Complemental strand, 1760017 - 1759782
Alignment:
| Q |
143 |
aaaaagacagaatgggcataacttttcaaagtcagaatggaattaaattctccaaagtaggaagtttctgcatttccttca----------agttgagag |
232 |
Q |
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| T |
1760017 |
aaaaagacagaatgggcataacttttcaaagtcagaatggaattaaattctccaaagtaggaagtttctgcatttccttcatttaggcaaaagttgagag |
1759918 |
T |
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| Q |
233 |
aacttttgtctttgcaacatgtcaaaaagtcacatacacaccattttctctttattgataaagtttttcttaaatgcaggaaaatttaagaaactcaaat |
332 |
Q |
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| T |
1759917 |
aacttttgtcttcgcaacatgtcaaaaagtcacatacacaccattttctctttattgataaagtttttcttaaatgcaggaaaatttaagaaactcaaat |
1759818 |
T |
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| Q |
333 |
atagaaatttcaaatcaagccatgacccctatatat |
368 |
Q |
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| T |
1759817 |
atagaaatttcaaatcaagccatgacccctatatat |
1759782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1760155 - 1760083
Alignment:
| Q |
1 |
gtaactcaaatctttattaagtatttcatccaaccacttggttaattacctaaatattttgtgctttgtatac |
73 |
Q |
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| T |
1760155 |
gtaactcaaagctttattaagtatttcatccaaccacttggttaattacctaaatattttgtgctttgtatac |
1760083 |
T |
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