View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3095_low_12 (Length: 375)
Name: NF3095_low_12
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 46874246 - 46873889
Alignment:
| Q |
1 |
aaaccaaaaagttgcaattgttataatcatcttgtaattttgctcacaatatgcaaatataagttatcatacactcgcacacaagcgaacaagannnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46874246 |
aaaccaaaaagttgcaattgttataatcatcttgtaattttgctcacaatatgcaaatataagttatcatacactcgcacacaagcgaacaagatttttt |
46874147 |
T |
|
| Q |
101 |
naaatataaggtctaggatcacaactgtggctgtgacgtacagatgtcttatgtcttcatcatcacaaatgcagctgcattaaccttatttgaccgcggt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46874146 |
taaatataaggtctaggaccacaactgtggctgagacgtacagatgtcttatgtcttcatcatcacaaatgcagctgcattaaccttatttgaccgcggt |
46874047 |
T |
|
| Q |
201 |
attaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaatgattgatgactcggacaatggggttgacgggaaaattca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46874046 |
attaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaattattgatgactcggataatggggttgacgggaaaattca |
46873947 |
T |
|
| Q |
301 |
taatttcattcaagtgttatgcaagtgttgttaaatagcggctgcattggagctattg |
358 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873946 |
taatttcattcaagtgttgtgcaagtgttgttaaatagcggctgcattggagctattg |
46873889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 46892047 - 46891771
Alignment:
| Q |
1 |
aaaccaaaaagttgcaattgttataatcatcttgtaatttt-gctcacaatatgcaaatataagttatcatacactcg-cacacaagcgaacaagannnn |
98 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
46892047 |
aaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatcatatattttacacacaagcgaacaagatttt |
46891948 |
T |
|
| Q |
99 |
nnnaaatataaggtctaggatcacaactgtggctgtgacgtacagatgtct---tatgtcttcat-cat-----cacaaatgcagctgcattaaccttat |
189 |
Q |
| |
|
||||||||||||| || || |||||||||| |||||||||||| || || |||| ||| |||||||||||||||||||||| ||| |
|
|
| T |
46891947 |
tttaaatataaggtctgcgaccatgactgtggctgagacgtacagatgcaaatataagttatcatacattcacacacaaatgcagctgcattaaccatat |
46891848 |
T |
|
| Q |
190 |
ttgaccgcggtattaaggatcgcggcatggtcgcaatttaaaactttgcaaatgagcaatgcacctcaaaatgattg |
266 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
46891847 |
ttgaccccaatattaaggatcgcggcatggtcacaatttaaaactttgcaaatgaacaatgtacctcaaaattattg |
46891771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 46891458 - 46891392
Alignment:
| Q |
275 |
gacaatggggttgacgggaaaattcataatttcattcaagtgttatgcaagtgttgttaaatagcgg |
341 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
46891458 |
gacaatgtggttgacggaaaaattcagaatttcattcaagtattatgtaagtgttgttaaatagcgg |
46891392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 46900111 - 46900046
Alignment:
| Q |
275 |
gacaatggggttgacgggaaaattcataatttcattcaagtgttatgcaagtgttgttaaatagcg |
340 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||| ||||| ||||| ||| |||||||| |
|
|
| T |
46900111 |
gacaatggggttgatgggaaaaagcagaatttcattcaagtattatgtaagtgatgtcaaatagcg |
46900046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27300708 - 27300646
Alignment:
| Q |
1 |
aaaccaaaaagttgcaattgttataatcatcttgt-aattttgctcacaatatgcaaatataa |
62 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||| || ||||| ||||||||| |
|
|
| T |
27300708 |
aaaccaaatagtttcaattgttataatcatcttgtaaattttgtacaaaatattcaaatataa |
27300646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27310630 - 27310556
Alignment:
| Q |
1 |
aaaccaaaaagttgcaattgtt-ataatcatcttgtaa-ttttgctcacaatatgcaaatataagttatcataca |
73 |
Q |
| |
|
|||||||| |||| |||||||| ||||| ||||||||| ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
27310630 |
aaaccaaatagtttcaattgtttataattatcttgtaatttttgtccacaatattcaaatataacttatcataca |
27310556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University