View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_16 (Length: 303)

Name: NF3095_low_16
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_16
NF3095_low_16
[»] chr7 (10 HSPs)
chr7 (1-290)||(18924212-18924498)
chr7 (1-163)||(34727313-34727475)
chr7 (1-163)||(34730471-34730633)
chr7 (223-287)||(34715667-34715731)
chr7 (22-163)||(34735091-34735232)
chr7 (1-163)||(18929251-18929413)
chr7 (220-287)||(18929118-18929185)
chr7 (119-162)||(34721114-34721157)
chr7 (220-287)||(34730699-34730766)
chr7 (220-287)||(34735298-34735365)
[»] chr4 (13 HSPs)
chr4 (123-162)||(4333817-4333856)
chr4 (99-162)||(6547564-6547627)
chr4 (99-162)||(6814017-6814080)
chr4 (123-162)||(4322800-4322839)
chr4 (99-162)||(6500009-6500072)
chr4 (119-162)||(6624110-6624153)
chr4 (99-162)||(6649298-6649361)
chr4 (119-162)||(6751090-6751133)
chr4 (99-162)||(6794687-6794750)
chr4 (119-161)||(6756709-6756751)
chr4 (125-162)||(4343207-4343244)
chr4 (126-162)||(4135482-4135518)
chr4 (114-162)||(6834411-6834459)
[»] chr6 (1 HSPs)
chr6 (98-154)||(5075404-5075460)
[»] scaffold0373 (1 HSPs)
scaffold0373 (99-162)||(11553-11616)
[»] chr8 (1 HSPs)
chr8 (220-253)||(3313198-3313231)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 18924498 - 18924212
Alignment:
Q  1 cactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924498 cactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcag 18924399  T
Q  101 caaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcatgtatgttcatcggttccattttataaactcgataatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  18924398 caaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcatgtatgttcatcggttccattttataaactcgata--- 18924302  T
Q  201 attaagcatataattaagccttgttgtgatgattattatacttccttgaccaaaccatttgcgacttatgcacaaagcatccaattgatg 290  Q
    || |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18924301 ataaagcatataactatgtcttgttgtgatgattattatacttccttgaccaaaccatttgcaacttatgcacaaagcatccaattgatg 18924212  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34727313 - 34727475
Alignment:
Q  1 cactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcag 100  Q
    |||||| ||||||||| | | ||||||||||||||||||||||||| ||||  ||  ||||||||   | ||| ||||||||| ||  |||||||||||     
T  34727313 cactcttttttccttcgcctggtcaacaaaaaggacccaatgacttgaagagctataggcaatcccccagagtacataacaacatcggtagaaaggtcac 34727412  T
Q  101 caaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 163  Q
    ||||| |||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  34727413 caaaaccttctataggaattggttgcttgaatgcatgccaactaaaaagctcaagagattcat 34727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34730471 - 34730633
Alignment:
Q  1 cactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcag 100  Q
    |||||| |||| |||| | ||||||||||||||||||||||||||||||||  ||  ||| ||||   | ||| | ||||||| ||  |||||||||||     
T  34730471 cactcttttttgcttcgcctagtcaacaaaaaggacccaatgacttcaagagctagaggcgatcccccagagtacttaacaacatcagtagaaaggtcac 34730570  T
Q  101 caaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 163  Q
    ||||| |||| |||||| |||||||||||||| ||| | |||| |||||||||||||||||||    
T  34730571 caaaaccttctataggaattggttgcttgaatacatgccaactgaaaagctcaagagattcat 34730633  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 34715667 - 34715731
Alignment:
Q  223 gttgtgatgattattatacttccttgaccaaaccatttgcgacttatgcacaaagcatccaattg 287  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34715667 gttgtgatgattattatacttccttgaccaaaccatttgcgtcttatgcacaaagcacccaattg 34715731  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 34735091 - 34735232
Alignment:
Q  22 gtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcagcaaaatcttcaataggatttg 121  Q
    ||||||||||||||||||||||||| ||||  ||  ||||||||   | ||| | ||||||| ||  ||||||| ||| ||||| |||| |||||| |||    
T  34735091 gtcaacaaaaaggacccaatgacttgaagagctagaggcaatcccctagagtacttaacaacatcagtagaaagctcaccaaaaccttctataggaattg 34735190  T
Q  122 gttgcttgaatgcatacaaactaaaaagctcaagagattcat 163  Q
    |||| |||||||||| | ||||||||||||||||||||||||    
T  34735191 gttgtttgaatgcatgccaactaaaaagctcaagagattcat 34735232  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 18929413 - 18929251
Alignment:
Q  1 cactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaagacttaacggcaatccatgacagttcataacaacttctctagaaaggtcag 100  Q
    |||||| |||| |||| | | ||||||||||| |||||||||||||  |||  || |||||||||   | ||| | | ||||| ||| ||||||||| |     
T  18929413 cactctttttttcttcgccttgtcaacaaaaaagacccaatgacttggagagctagcggcaatcccccagagtacttgacaacatctgtagaaaggttac 18929314  T
Q  101 caaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattcat 163  Q
    | ||| |||  ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  18929313 cgaaaccttttataggatttggttgcttgaatgcatgccaactaaaaagctcaagagattcat 18929251  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 18929185 - 18929118
Alignment:
Q  220 cttgttgtgatgattattatacttccttgaccaaaccatttgcgacttatgcacaaagcatccaattg 287  Q
    |||||||||||||||||| ||||||||| ||||||||||| | |||||  ||||||||||| ||||||    
T  18929185 cttgttgtgatgattattctacttccttcaccaaaccattcgtgacttccgcacaaagcattcaattg 18929118  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 34721114 - 34721157
Alignment:
Q  119 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  34721114 ttggttgcttgaatgcataccaactaaaaagttcaagagattca 34721157  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 34730699 - 34730766
Alignment:
Q  220 cttgttgtgatgattattatacttccttgaccaaaccatttgcgacttatgcacaaagcatccaattg 287  Q
    |||||||||||||||||| ||||||||| ||||||||||  | |||||  ||||||||||| ||||||    
T  34730699 cttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattg 34730766  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 34735298 - 34735365
Alignment:
Q  220 cttgttgtgatgattattatacttccttgaccaaaccatttgcgacttatgcacaaagcatccaattg 287  Q
    |||||||||||||||||| ||||||||| ||||||||||  | |||||  ||||||||||| ||||||    
T  34735298 cttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattg 34735365  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 4333856 - 4333817
Alignment:
Q  123 ttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4333856 ttgcttgaatgcatgcaaactaaaaagctcaagagattca 4333817  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 6547564 - 6547627
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||| || ||| |||||||||||||||||| | |||| || |||||||||||||||    
T  6547564 agcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattca 6547627  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 6814080 - 6814017
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  6814080 agcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 6814017  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 4322800 - 4322839
Alignment:
Q  123 ttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  4322800 ttgcttgaatgcatgccaactaaaaagctcaagagattca 4322839  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 6500009 - 6500072
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    ||||||||||||  | ||| |||||||||||||||||| | | || ||||||||||||||||||    
T  6500009 agcaaaatcttctgttggagttggttgcttgaatgcatgccagctgaaaagctcaagagattca 6500072  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 6624110 - 6624153
Alignment:
Q  119 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  6624110 ttggttgcttgaatgcatgccaactgaaaagctcaagagattca 6624153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 6649361 - 6649298
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||   ||||| ||||||| |||||||||| | |||| ||||||||||||||||||    
T  6649361 agcaaaatcttttgtaggacttggttgattgaatgcatgccaactgaaaagctcaagagattca 6649298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 6751133 - 6751090
Alignment:
Q  119 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  6751133 ttggttgcttgaatgcatgccaactgaaaagctcaagagattca 6751090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 6794750 - 6794687
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||| ||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  6794750 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 6794687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 6756751 - 6756709
Alignment:
Q  119 ttggttgcttgaatgcatacaaactaaaaagctcaagagattc 161  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  6756751 ttggttgcttgaatgcatgccaactgaaaagctcaagagattc 6756709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 4343244 - 4343207
Alignment:
Q  125 gcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||||||| | |||||||||||||||||||||||    
T  4343244 gcttgaatgcatgccaactaaaaagctcaagagattca 4343207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 4135482 - 4135518
Alignment:
Q  126 cttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    ||||||||||| | |||||||||||||||||||||||    
T  4135482 cttgaatgcatgccaactaaaaagctcaagagattca 4135518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 6834459 - 6834411
Alignment:
Q  114 aggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||| ||||| |||||||||||| | |||| ||||||||||||||||||    
T  6834459 aggacttggtagcttgaatgcatgccaactgaaaagctcaagagattca 6834411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 5075404 - 5075460
Alignment:
Q  98 cagcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaa 154  Q
    ||||||||||||| |||||| ||| ||| |||||||||| | |||||||||||||||    
T  5075404 cagcaaaatcttctataggacttgcttgtttgaatgcatgccaactaaaaagctcaa 5075460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 11553 - 11616
Alignment:
Q  99 agcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 162  Q
    |||||||| ||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  11553 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 11616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 3313231 - 3313198
Alignment:
Q  220 cttgttgtgatgattattatacttccttgaccaa 253  Q
    ||||||||||||||||||||||||||| ||||||    
T  3313231 cttgttgtgatgattattatacttcctggaccaa 3313198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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