View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_low_19 (Length: 266)
Name: NF3095_low_19
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 45794327 - 45794241
Alignment:
| Q |
83 |
agaaaacatgtgttgtggcaagtattattcttagctttccttgtttgatggttcatggtaaaaagtgttttccttgtgaccttgtcc |
169 |
Q |
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| T |
45794327 |
agaaaacatgtgttgtggcaagtattattcttagctttccttgtttgatggttcatggtaaaaagtgttttccttgtgaccttgtcc |
45794241 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 45793514 - 45793472
Alignment:
| Q |
163 |
cttgtcccaacccattttttccaccaaaagattaattttaata |
205 |
Q |
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| T |
45793514 |
cttgtcccaacccatgttttccaccaaaagattaattttaata |
45793472 |
T |
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