View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_21 (Length: 250)

Name: NF3095_low_21
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_21
NF3095_low_21
[»] chr6 (39 HSPs)
chr6 (15-250)||(26805181-26805417)
chr6 (17-250)||(27674823-27675057)
chr6 (35-215)||(27662640-27662820)
chr6 (17-215)||(25547695-25547892)
chr6 (15-182)||(27590373-27590541)
chr6 (17-218)||(25513587-25513787)
chr6 (31-216)||(27715764-27715949)
chr6 (31-233)||(27681654-27681856)
chr6 (17-214)||(26145713-26145909)
chr6 (32-218)||(25485702-25485888)
chr6 (32-218)||(28795121-28795307)
chr6 (35-216)||(26851224-26851405)
chr6 (35-233)||(26886806-26887004)
chr6 (31-233)||(27608384-27608586)
chr6 (15-233)||(27695838-27696057)
chr6 (109-227)||(26658685-26658803)
chr6 (109-227)||(26764656-26764774)
chr6 (35-216)||(27601991-27602172)
chr6 (31-143)||(26649263-26649375)
chr6 (31-143)||(26755231-26755343)
chr6 (32-216)||(31287293-31287477)
chr6 (17-217)||(26058632-26058831)
chr6 (17-217)||(26078602-26078801)
chr6 (31-218)||(26961823-26962010)
chr6 (32-217)||(25582420-25582605)
chr6 (31-219)||(26638113-26638301)
chr6 (31-219)||(26744079-26744267)
chr6 (32-214)||(25076609-25076791)
chr6 (32-143)||(28789172-28789283)
chr6 (31-140)||(26952408-26952517)
chr6 (32-88)||(25491406-25491462)
chr6 (32-141)||(26876363-26876472)
chr6 (109-218)||(26980121-26980230)
chr6 (33-143)||(26625919-26626029)
chr6 (33-143)||(26731896-26732006)
chr6 (35-141)||(26826678-26826784)
chr6 (171-223)||(26649183-26649235)
chr6 (171-223)||(26755151-26755203)
chr6 (171-217)||(26952331-26952377)
[»] chr8 (2 HSPs)
chr8 (32-233)||(22023973-22024174)
chr8 (31-233)||(29271103-29271305)
[»] scaffold0277 (2 HSPs)
scaffold0277 (32-233)||(1953-2154)
scaffold0277 (32-143)||(10916-11027)
[»] scaffold0349 (1 HSPs)
scaffold0349 (31-216)||(15996-16181)
[»] scaffold0419 (1 HSPs)
scaffold0419 (32-233)||(10232-10433)
[»] chr1 (5 HSPs)
chr1 (17-212)||(265580-265776)
chr1 (32-209)||(28124889-28125066)
chr1 (32-143)||(28129920-28130031)
chr1 (35-140)||(26138790-26138895)
chr1 (170-227)||(28130058-28130115)
[»] chr4 (15 HSPs)
chr4 (26-141)||(18686913-18687028)
chr4 (26-141)||(18696707-18696822)
chr4 (26-141)||(18721378-18721493)
chr4 (26-141)||(18676864-18676979)
chr4 (32-141)||(18728806-18728915)
chr4 (26-87)||(18652782-18652843)
chr4 (26-141)||(18726298-18726412)
chr4 (26-130)||(18682066-18682170)
chr4 (176-216)||(18682171-18682211)
chr4 (172-216)||(18687059-18687103)
chr4 (176-216)||(18726447-18726487)
chr4 (176-212)||(18728950-18728986)
chr4 (176-214)||(18721528-18721566)
chr4 (176-216)||(18677014-18677054)
chr4 (172-212)||(18696853-18696893)
[»] chr2 (1 HSPs)
chr2 (34-141)||(17990414-17990521)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 26805417 - 26805181
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagatt 113  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26805417 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagctcttttagatt 26805318  T
Q  114 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26805317 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaa 26805218  T
Q  214 ttgttatttgataactctagttcttcaacattaacac 250  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26805217 ttgttgtttgataactctagttcttcaacattaacac 26805181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 27674823 - 27675057
Alignment:
Q  17 tagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcg 115  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||   | ||| |||||| |||| ||||| |    
T  27674823 tagtgcaataaaaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcggaaagctctttaagatttg 27674922  T
Q  116 gtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    |||||||||||||||||||||||||||| | |||||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27674923 gtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaattttgaaatt 27675022  T
Q  216 gttatttgataactctagttcttcaacattaacac 250  Q
    ||||| |||||| |||||   ||| ||||||||||    
T  27675023 gttatgtgataagtctagcaattccacattaacac 27675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 27662640 - 27662820
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||||||||||||    
T  27662640 aacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatccttctgcataaagatttgttagattgggtggaatccctctaatttc 27662739  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    |||||||||    ||||||  ||||| |||||||| ||||| ||||||||||||||| ||||  |||||||||||||||||    
T  27662740 ctcaagagactcacagtaatccaaataaagatgctcaagatagtgacattcactaaggcacttgggaagaattttgaaatt 27662820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 25547892 - 25547695
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  25547892 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttgg 25547794  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaatt 215  Q
    ||||||||||||||||||||||||| |  ||||||    ||||| ||| || ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  25547793 tggaatccctctaatttcctcaagaaaattgcagttcttcaaataaagttgtttaagatggtgacattcgctaaggcactcaggaagaattgtgaaatt 25547695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 27590373 - 27590541
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagatt 113  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |  |||  || |||||  |||||    
T  27590373 tatagtgcaataaaaaacaacaacaaacctgattcattaacattcttctacttgatgaactcaatgattcacatccataagcatcaaccacttcaagatt 27590472  T
Q  114 cggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgaca 182  Q
     |||||||||||||||||||||||||||||| |||| | | |||||| || |||  |||||||||||||    
T  27590473 tggtggaatccctctaatttcctcaagagatttgcaatcatacaaattaatatgactaagatggtgaca 27590541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 25513787 - 25513587
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  25513787 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttgg 25513689  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||||||||||   ||||  |   ||||| ||||||||||||| ||||| |||||| ||| ||||| ||||||||| ||||||||    
T  25513688 tggaatccctctaatttcctcaagagccttgcaaaacttcaaataaagatgcttaagacggtgatattcaccaaggcactcgggaagaattgtgaaattg 25513589  T
Q  217 tt 218  Q
    ||    
T  25513588 tt 25513587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 27715764 - 27715949
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| ||||  || | |||||||||| ||||||||||||||||    
T  27715764 caacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaa 27715863  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||| ||   ||||||   || || ||  |    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  27715864 tttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattg 27715949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 27681856 - 27681654
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   |   ||| ||||| |||||||||| ||||||||||||||||    
T  27681856 caacaactaacctgactcattaacattcttctacttgaggaactcaatgatttacaatatctagcacaaagctcttttagatttggtggaatccctctaa 27681757  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||||||||||   |||| |   || || ||  |    ||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||||| ||    
T  27681756 tttcctcaagagactcgcagcacatcacattaatttcaacaagatggtgacattcacgaaggcactcaggaagaattttgaaattgctaaatgataagtc 27681657  T
Q  231 tag 233  Q
    |||    
T  27681656 tag 27681654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 26145909 - 26145713
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||  | |||||| |||||  ||  ||||| ||    
T  26145909 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcacaaagcctttcaagatttgg 26145811  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    ||||||||||||||||||||||||||    |||  |   ||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||| ||||||    
T  26145810 tggaatccctctaatttcctcaagagcctcgcaaaacttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaat 26145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 25485888 - 25485702
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||| | |||  | | |||| |||||  ||  ||||| |||||||||||||||||    
T  25485888 aacaacaaacctgactcattaacattcttatacttgaggaattcaatgaataacactcgtttgcaaaaagcctttcaagatttggtggaatccctctaat 25485789  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    |||||||||||   |||| |    ||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||    
T  25485788 ttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtgaaattgtt 25485702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 28795307 - 28795121
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||  ||  ||||| |||||||||||||||||    
T  28795307 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccctctaat 28795208  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    |||||| |||||  |||||| |  |||   ||| |  |||||| ||| |||||||||||| |||||||||| || ||||||||||||    
T  28795207 ttcctcgagagacttgcagttatccaatctaaggttattaagaaggtaacattcactaaggcactcaggaataaatttgaaattgtt 28795121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 26851405 - 26851224
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||| ||  ||  |||||| ||    |||||||||||||||||||||||||||||    
T  26851405 aacaaacctgactcaataacattcttctgcttgaggaactcaatgatttgcaatctattgcagacaggtaatttagattcggtggaatccctctaatttc 26851306  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||| |  |||||  | ||||  |||| | | ||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  26851305 ctcaagaaaattgcagccatacaatacaagctccctaagacggtgacattcactaaggcactcgggaagaatttttaaattg 26851224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 26887004 - 26886806
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| |  |||  |   ||||||||  |||| ||||| ||||| ||||||||||||||    
T  26887004 aacaaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttatagcagaaaggtctttaagatttggtggtatccctctaatttc 26886905  T
Q  135 ctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactctag 233  Q
    |||||||||  |||| | |  ||| |||||   | ||||| ||||||||||  |||| ||||| |||||||||||||||||||| |||||||| |||||    
T  26886904 ctcaagagacttgcaatgattcaattcaagtatcctaagaaggtgacattccttaaggcactcgggaagaattttgaaattgttctttgataagtctag 26886806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 27608384 - 27608586
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||| |   ||||||||||  ||| ||||| ||||||||||||||||    
T  27608384 caacaactaacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccctctaa 27608483  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||||||| ||   |||||    || |  ||   |   ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||    
T  27608484 tttcctcaagggactcgcagtccctcacagtaattagaacaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatatgataagtc 27608583  T
Q  231 tag 233  Q
    |||    
T  27608584 tag 27608586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 27695838 - 27696057
Alignment:
Q  15 tatagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcactt-ttagat 112  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |  ||| | || ||||   ||||    
T  27695838 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacatgatgaactcaatgatttgcattcataagcatagag-acttccaagat 27695936  T
Q  113 tcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    | |||||||||||||||||||||||||| ||  |||||||   || |  ||  | |  ||||||||||| ||||||||| ||||| ||||||||||||||    
T  27695937 ttggtggaatccctctaatttcctcaagggacttgcagtacctcacaataatttccacaagatggtgactttcactaaggcactctggaagaattttgaa 27696036  T
Q  213 attgttatttgataactctag 233  Q
    || | ||| |||||| |||||    
T  27696037 atcgctatatgataaatctag 27696057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 26658803 - 26658685
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    |||||| |||||||||||||||||||||||||| ||  ||| | |  ||||| ||||||||||||| |||||||||||||||| ||||| || |||||||    
T  26658803 agattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattt 26658704  T
Q  209 tgaaattgttatttgataa 227  Q
    |||||||||| ||||||||    
T  26658703 tgaaattgttctttgataa 26658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 26764774 - 26764656
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    |||||| |||||||||||||||||||||||||| ||  ||| | |  ||||| ||||||||||||| |||||||||||||||| ||||| || |||||||    
T  26764774 agattctgtggaatccctctaatttcctcaagatattggcatttatccaaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattt 26764675  T
Q  209 tgaaattgttatttgataa 227  Q
    |||||||||| ||||||||    
T  26764674 tgaaattgttctttgataa 26764656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 27601991 - 27602172
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttaca-tccttctgcagaaagcacttttagattcggtggaatccctctaattt 133  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||| ||||  ||  | ||| ||||| ||||||| |||||||||||    
T  27601991 aacaaacctgactcaataacattcttctacttgaggaactcaatgattcacagtcctt-tgcatgaaatattttaagatttggtggaaaccctctaattt 27602089  T
Q  134 cctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||| |  |||||  |  || || ||  |  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27602090 cctcaagaaacttgcagccatccacataaatgtttttaagaaggtgacattcactaaggcactcaggaagaattttgaaattg 27602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 26649375 - 26649263
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||    ||||||||||  ||| ||||| ||||||||||| ||||    
T  26649375 caacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaa 26649276  T
Q  131 tttcctcaagaga 143  Q
    |||||||||||||    
T  26649275 tttcctcaagaga 26649263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 26755343 - 26755231
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||    ||||||||||  ||| ||||| ||||||||||| ||||    
T  26755343 caacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaa 26755244  T
Q  131 tttcctcaagaga 143  Q
    |||||||||||||    
T  26755243 tttcctcaagaga 26755231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 31287477 - 31287293
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||   |  || |||||| |||  ||||| |||||||||||||||||    
T  31287477 aacaacaaacctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcggaaagctcttcaagatttggtggaatccctctaat 31287378  T
Q  132 ttcctcaagagatgtgcagtaagacaaatc-aagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||  ||||  ||   || || ||||| ||| | | ||||||||||| |||||||||| |||||||| |||||||||    
T  31287377 ttcctcaagagacttgcaacaatcgaattcaaagat-cttcataaggtgacattcattaagacactcgggaagaatattgaaattg 31287293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 26058831 - 26058632
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| ||    
T  26058831 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttgg 26058733  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| ||||||||    
T  26058732 tggaatccctctaatttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattg 26058633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 26078801 - 26078602
Alignment:
Q  17 tagtgcaataaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcgg 116  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| ||    
T  26078801 tagtgcaataaaaa-aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttgg 26078703  T
Q  117 tggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||||||||||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| ||||||||    
T  26078702 tggaatccctctaatttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattg 26078603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 26962010 - 26961823
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||||||| || | |||||||||||    |||||||||||| |||||    ||||||||||  |   ||||| ||||||||||||||||    
T  26962010 caacaacaaacctgactcaatagccttcttctactttccaaactcaatgattcacatctcaatgcagaaagccgtccaagatttggtggaatccctctaa 26961911  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtt 218  Q
    ||||||||||| |  |||||| |  |||  |||| | |  |||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  26961910 tttcctcaagaaacttgcagtcatccaacacaagctccccaagacggtgacattcactaaggcactcgggaagaattttgaaattgtt 26961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 25582605 - 25582420
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||     ||||| |||| | ||  ||||| |||||||||||||||||    
T  25582605 aacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctctaat 25582506  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgt 217  Q
    |||| ||||||    |||  |   ||||| ||||||| |||||  ||||||||||| ||| ||||| ||||||||| |||||||||    
T  25582505 ttccacaagagccaagcaaaacatcaaattaagatgcataagacagtgacattcaccaaggcactcgggaagaattgtgaaattgt 25582420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 26638301 - 26638113
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctcta 129  Q
    ||||||||||||||||||| || | ||||||||||||| ||||||||||| |  ||| |   |||||| ||| | ||| ||||| |||||||||||||||    
T  26638301 caacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaattt-agatttggtggaatccctcta 26638203  T
Q  130 atttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtta 219  Q
    ||||| |||||||   |||| | |  ||||| |||   | ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  26638202 atttcttcaagagccttgcattcatccaaattaaggatcctaagaaggtgacatacactaaggcactcaggaagaattttgaaattgtta 26638113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 26744267 - 26744079
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctcta 129  Q
    ||||||||||||||||||| || | ||||||||||||| ||||||||||| |  ||| |   |||||| ||| | ||| ||||| |||||||||||||||    
T  26744267 caacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaattt-agatttggtggaatccctcta 26744169  T
Q  130 atttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgtta 219  Q
    ||||| |||||||   |||| | |  ||||| |||   | ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  26744168 atttcttcaagagccttgcattcatccaaattaaggatcctaagaaggtgacatacactaaggcactcaggaagaattttgaaattgtta 26744079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 25076791 - 25076609
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||| || |||||||||||||||||  ||| ||||||| || |||| |  || ||| ||||| | | ||||| |||||||||| |||||    
T  25076791 aacaacaaacctgacccaataacattcttctacttgtggaattcaatgaattgcatcttattgtagacaagcaatat-agattgggtggaatccatctaa 25076693  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    |||| |||||||    ||| |||  ||| | ||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  25076692 tttcttcaagagcccagcaataatccaatttaagatccttaagatggcgacattcactaaggcactcgggaagaattttgaaat 25076609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 28789283 - 28789172
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||||| |||||   ||||||||||  |   ||||| |||||||||||||||||    
T  28789283 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaat 28789184  T
Q  132 ttcctcaagaga 143  Q
    |||||| |||||    
T  28789183 ttcctccagaga 28789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 26952517 - 26952408
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||| || |  ||  || ||||||||||   || ||||||||||||||||||||| |    
T  26952517 caacaacaaacctgactcaatagcattcttctacttgcggaactcaacgactcgcaatctactgcagaaagtctttctagattcggtggaatccctctga 26952418  T
Q  131 tttcctcaag 140  Q
    ||||||||||    
T  26952417 tttcctcaag 26952408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 25491406 - 25491462
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatc 88  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  25491406 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcatc 25491462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 26876472 - 26876363
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||| || | |||||||||||||||||||| | |||||||||  |||     ||||||||||  || || ||| |||||||||||||||||    
T  26876472 aacaacaaacctgtctaaataacattcttctacttgatggattcaatgattcgcattgccttgcagaaagcctttctatatttggtggaatccctctaat 26876373  T
Q  132 ttcctcaaga 141  Q
    ||||||||||    
T  26876372 ttcctcaaga 26876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 26980230 - 26980121
Alignment:
Q  109 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 208  Q
    ||||| ||||||| ||||||||||||||||||| |  |||||  |  |||  |||| |||  |||||||||||||||| |||| |||||||| |||||||    
T  26980230 agatttggtggaaaccctctaatttcctcaagaaacttgcagccatccaatacaagctgccgaagatggtgacattcattaaggcactcaggtagaattt 26980131  T
Q  209 tgaaattgtt 218  Q
    ||||||||||    
T  26980130 tgaaattgtt 26980121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 26626029 - 26625919
Alignment:
Q  33 acaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||   ||| |   |||||| ||| | ||| ||||| |||||||||||||||||    
T  26626029 acaacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaattt-agatttggtggaatccctctaat 26625931  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  26625930 ttcctcaagaga 26625919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 26732006 - 26731896
Alignment:
Q  33 acaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcaga-aagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||   ||| |   |||||| ||| | ||| ||||| |||||||||||||||||    
T  26732006 acaacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaattt-agatttggtggaatccctctaat 26731908  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  26731907 ttcctcaagaga 26731896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 26826784 - 26826678
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    |||||||||| |||| || ||||||| |||||||| |||||||||||| |||||||  |||||| |     | |||||| ||||||||||||||||| ||    
T  26826784 aacaaacctggctcaatagcattcttatacttgataaactcaatgattcacatcctattgcagagaaattgtatagattgggtggaatccctctaatctc 26826685  T
Q  135 ctcaaga 141  Q
    |||||||    
T  26826684 ctcaaga 26826678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 26649235 - 26649183
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgttatttg 223  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  26649235 aagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttg 26649183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 26755203 - 26755151
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgttatttg 223  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  26755203 aagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttg 26755151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 26952377 - 26952331
Alignment:
Q  171 aagatggtgacattcactaagacactcaggaagaattttgaaattgt 217  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  26952377 aagatggtggcattcactaaggcactcgggaagaattttgaaattgt 26952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 22024174 - 22023973
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||  ||||||||||  ||  ||||| |||||||||||||||||    
T  22024174 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaat 22024075  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactct 231  Q
    |||||||| |||| |||||  |  ||||| ||||  |  || | ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||    
T  22024074 ttcctcaacagatttgcagcgatccaaattaagaacccaaacaaggtgacattcattaaggcactcgggaagaattttgaaattgttattcgataagtct 22023975  T
Q  232 ag 233  Q
    ||    
T  22023974 ag 22023973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 29271103 - 29271305
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||   |||  |||||||| |||||||||| ||||||||||||||||    
T  29271103 caacaactaacctgactcattaacattcttttacttgaggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccctctaa 29271202  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||| ||||||   ||||  |  || || ||  |  | ||||||| ||||||||||||| |||||||||||||||||||||| ||||  |||||| ||    
T  29271203 tttccttaagagaatggcagccactcatattaattttataaagatggagacattcactaaggcactcaggaagaattttgaaatagttaaatgataagtc 29271302  T
Q  231 tag 233  Q
    |||    
T  29271303 tag 29271305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 1953 - 2154
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||| ||  ||||| |||||||||||||||||    
T  1953 aacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcagaaagcatttcaagatttggtggaatccctctaat 2052  T
Q  132 ttcctcaagagatgtgcagtaagacaa-atcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactc 230  Q
    |||||| |||||  |||||| |  ||| || | |||  |||||| |||||||||||||||| |||||||||| || |||||||||||||| |||||| ||    
T  2053 ttcctccagagacttgcagttatccaatataaggat-attaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttatatgataagtc 2151  T
Q  231 tag 233  Q
    |||    
T  2152 tag 2154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 10916 - 11027
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || |||| |||||||||| |||||||||||||| |||||   ||||||||||  |   ||||| |||||||||||||||||    
T  10916 aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaat 11015  T
Q  132 ttcctcaagaga 143  Q
    |||||| |||||    
T  11016 ttcctccagaga 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 16181 - 15996
Alignment:
Q  31 caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaa 130  Q
    ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||| ||||  || | |||||||||| ||||||||||||||||    
T  16181 caacaactaacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaa 16082  T
Q  131 tttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||| ||   ||||||   || || ||  |    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  16081 tttcctcaagggactcgcagtaccccacattaatttcaacaagatggtgacattcactaaggcactcaggaagaattttgaaattg 15996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 10433 - 10232
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||   ||||||||||  ||  ||||| |||| ||||||||||||    
T  10433 aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaat 10334  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataactct 231  Q
    |||||| |||||  |||||| |  |||   ||| |  |||||| |||||||||||||||| |||||||||| || ||||||||||||  ||||||| |||    
T  10333 ttcctccagagacttgcagttatccaatataaggttattaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttccttgataagtct 10234  T
Q  232 ag 233  Q
    ||    
T  10233 ag 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 265580 - 265776
Alignment:
Q  17 tagtgcaataaaag-caacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcg 115  Q
    |||||||||||||  ||||||||||||||||||| |||||||||| ||||||| ||||||||||| || ||| | |  ||| ||||| |||| ||||| |    
T  265580 tagtgcaataaaaaacaacaacaaacctgactcaataacattcttttacttgaggaactcaatgagttgcattcatacgcaaaaagctctttaagatttg 265679  T
Q  116 gtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    |||||||||||||||||||||||||| |  ||||||||  ||  | ||  |    ||||||||||||||||||||| |||||||||||| |||||||    
T  265680 gtggaatccctctaatttcctcaagatacttgcagtaactcacgttaattttaacaagatggtgacattcactaaggcactcaggaagagttttgaa 265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 28124889 - 28125066
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    ||||||||||||| |||| || ||||||||||| ||| ||| | ||||||| |||||    |||||||| |  |||||| || |||||||||||||||||    
T  28124889 aacaacaaacctggctcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccattttaggtttggtggaatccctctaat 28124988  T
Q  132 ttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaatttt 209  Q
    ||||||||||||  |||||| |  |||   |||   ||| ||| |||||||||||||||||||||| |||||||||||    
T  28124989 ttcctcaagagacttgcagtcatccaatctaaggacctttagaaggtgacattcactaagacactcgggaagaatttt 28125066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 28129920 - 28130031
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| || ||||||||||| ||| ||| | ||||||| |||||    |||||||| |  |||||| || ||||||| |||||||||    
T  28129920 aacaacaaacctgactcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccgttttaggtttggtggaaaccctctaat 28130019  T
Q  132 ttcctcaagaga 143  Q
    ||||||||||||    
T  28130020 ttcctcaagaga 28130031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 26138895 - 26138790
Alignment:
Q  35 aacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaatttc 134  Q
    ||||||||||||||| |||||| ||| ||| ||| ||| ||||||| || |||  |  |||||||| |  ||||||||| |||||||||||| |||||||    
T  26138895 aacaaacctgactcaataacatccttatacatgaggaagtcaatgacttgcattgtattgcagaaaacttttttagatttggtggaatccctttaatttc 26138796  T
Q  135 ctcaag 140  Q
    ||||||    
T  26138795 ctcaag 26138790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 28130058 - 28130115
Alignment:
Q  170 taagatggtgacattcactaagacactcaggaagaattttgaaattgttatttgataa 227  Q
    ||||||||||||||||| |||||||||| |||| || ||| | |||||||| ||||||    
T  28130058 taagatggtgacattcattaagacactccggaataacttttatattgttatctgataa 28130115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18686913 - 18687028
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  | | ||||  |||   ||| |||||||||||||||||    
T  18686913 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatatttgagattcggtggaatccc 18687012  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18687013 tctaatttcctcaaga 18687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18696707 - 18696822
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  | ||||  |||   ||| ||||||||||||| |||    
T  18696707 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatcgatatgcatcaagatatttgagattcggtggaagccc 18696806  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18696807 tctaatttcctcaaga 18696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18721378 - 18721493
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||  |||   |||   ||| ||||||||||||| |||    
T  18721378 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacattctaatgcttcaagatatttgagattcggtggaaaccc 18721477  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18721478 tctaatttcctcaaga 18721493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18676864 - 18676979
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |  |||   ||    ||| ||||||||||||| |||    
T  18676864 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacatcttaatgcttcaaaatatttgagattcggtggaaaccc 18676963  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18676964 tctaatttcctcaaga 18676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 18728806 - 18728915
Alignment:
Q  32 aacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaat 131  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |   ||||  |||   ||| ||||||||||||| |||||||||    
T  18728806 aacaacaaacctgactcaataacattcttctagttgaggaactcaatgatttacattcaaatgcatcaagacatttgagattcggtggaaaccctctaat 18728905  T
Q  132 ttcctcaaga 141  Q
    ||||||||||    
T  18728906 ttcctcaaga 18728915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 18652782 - 18652843
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacat 87  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18652782 aaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttacat 18652843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 18726298 - 18726412
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| |||||||||||||||||||  || || |||||| |||| |||||||||||||||||||||  ||||  |||   ||| ||||||||||||| |||    
T  18726298 aaaaacaacaacaaacctgactcaacaaaat-cttctatttgaggaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccc 18726396  T
Q  126 tctaatttcctcaaga 141  Q
    ||||||||||||||||    
T  18726397 tctaatttcctcaaga 18726412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 18682066 - 18682170
Alignment:
Q  26 aaaagcaacaacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccc 125  Q
    |||| |||||||||||||||||||  |||||||||||| ||||  ||||||||||||||||||||  ||||  |||   ||| ||||||||||||| |||    
T  18682066 aaaaacaacaacaaacctgactcaacaacattcttctatttgagcaactcaatgatttacatcctaatgcacgaagacatttgagattcggtggaaaccc 18682165  T
Q  126 tctaa 130  Q
    |||||    
T  18682166 tctaa 18682170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18682171 - 18682211
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  18682171 ggtgacattcactaaggcactcgggaagaattttgaaattg 18682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 18687059 - 18687103
Alignment:
Q  172 agatggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||| |||||||||||||||| ||||| ||||||||||||||||||    
T  18687059 agaaggtgacattcactaaggcactcgggaagaattttgaaattg 18687103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18726447 - 18726487
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  18726447 ggtgacattcactaaggcactcgggaagaattttgaaattg 18726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 18728950 - 18728986
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaa 212  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18728950 ggtgacattcactaaggcactcaggaagaattttgaa 18728986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 18721528 - 18721566
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaat 214  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  18721528 ggtgacattcattaaggcactcaggaagaattttgaaat 18721566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 18677014 - 18677054
Alignment:
Q  176 ggtgacattcactaagacactcaggaagaattttgaaattg 216  Q
    ||||||||||| |||| ||||| ||||||||||||||||||    
T  18677014 ggtgacattcattaaggcactcgggaagaattttgaaattg 18677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 18696853 - 18696893
Alignment:
Q  172 agatggtgacattcactaagacactcaggaagaattttgaa 212  Q
    ||| |||||||||||||||| ||||| ||||||||||||||    
T  18696853 agaaggtgacattcactaaggcactcgggaagaattttgaa 18696893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 17990414 - 17990521
Alignment:
Q  34 caacaaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagcacttttagattcggtggaatccctctaattt 133  Q
    |||||||||||||| | ||| |||||||||||||| ||| |||||||||| ||  ||  |||||| |    ||  |||||||||||||||||| ||||||    
T  17990414 caacaaacctgactaagtaaaattcttctacttgaggaaatcaatgatttgcactctattgcagatattttttcaagattcggtggaatccctttaattt 17990513  T
Q  134 cctcaaga 141  Q
    ||||||||    
T  17990514 cctcaaga 17990521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University