View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_23 (Length: 243)

Name: NF3095_low_23
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_23
NF3095_low_23
[»] chr6 (33 HSPs)
chr6 (18-243)||(26804890-26805115)
chr6 (18-209)||(27590578-27590769)
chr6 (26-189)||(27703832-27703995)
chr6 (18-209)||(28788759-28788950)
chr6 (18-189)||(27716115-27716286)
chr6 (18-205)||(28794783-28794970)
chr6 (18-189)||(27608735-27608906)
chr6 (18-209)||(31286950-31287141)
chr6 (18-209)||(27675172-27675366)
chr6 (62-175)||(26826241-26826354)
chr6 (62-175)||(25076269-25076382)
chr6 (62-175)||(26851087-26851200)
chr6 (62-175)||(27425225-27425338)
chr6 (132-189)||(27681472-27681529)
chr6 (132-183)||(27696212-27696263)
chr6 (62-175)||(25513293-25513406)
chr6 (134-175)||(26648972-26649013)
chr6 (134-175)||(26754940-26754981)
chr6 (62-175)||(27528904-27529017)
chr6 (132-175)||(26979898-26979941)
chr6 (62-178)||(27602352-27602465)
chr6 (62-175)||(26058325-26058438)
chr6 (62-175)||(26078295-26078408)
chr6 (62-175)||(27662845-27662958)
chr6 (132-176)||(26961599-26961643)
chr6 (55-102)||(25547379-25547426)
chr6 (132-175)||(25582195-25582238)
chr6 (132-175)||(26864096-26864139)
chr6 (132-175)||(26886597-26886640)
chr6 (132-175)||(26952265-26952308)
chr6 (56-102)||(26952189-26952235)
chr6 (56-102)||(26961523-26961569)
chr6 (132-172)||(25485469-25485509)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-209)||(11249-11440)
scaffold0277 (26-209)||(2286-2469)
[»] scaffold0349 (1 HSPs)
scaffold0349 (18-189)||(15659-15830)
[»] chr8 (2 HSPs)
chr8 (18-189)||(29271454-29271625)
chr8 (70-175)||(22023703-22023808)
[»] scaffold0419 (1 HSPs)
scaffold0419 (26-209)||(9917-10100)
[»] chr2 (1 HSPs)
chr2 (68-170)||(17990853-17990955)
[»] chr1 (3 HSPs)
chr1 (62-175)||(265960-266073)
chr1 (56-175)||(28125322-28125441)
chr1 (132-176)||(26138422-26138466)
[»] scaffold0003 (1 HSPs)
scaffold0003 (62-175)||(62025-62138)
[»] chr4 (8 HSPs)
chr4 (62-175)||(18076217-18076330)
chr4 (209-243)||(18653072-18653106)
chr4 (209-243)||(18721668-18721702)
chr4 (209-243)||(18726589-18726623)
chr4 (209-243)||(18729090-18729124)
chr4 (210-243)||(18687209-18687242)
chr4 (132-168)||(18682391-18682427)
chr4 (132-168)||(18726667-18726703)
[»] scaffold1870 (1 HSPs)
scaffold1870 (26-102)||(1198-1274)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 26804890 - 26805115
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26804890 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 26804989  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctgaatgataaa 217  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26804990 gttgaattatactcccataggagaattgctatcttcatttcaaaatctgagtgaacttgatgagttatcagtacgggaatgtggaatgctgaatgataaa 26805089  T
Q  218 atgtattctataatgttttcaaatgt 243  Q
    ||||||||||||||||||||||||||    
T  26805090 atgtattctataatgttttcaaatgt 26805115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 27590769 - 27590578
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    |||| ||||||||||||||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||   |||||    
T  27590769 tagggttggcatctcttaaagaattgaagctttcttgttgttatagtctcaaaagttttccaaaattattatgcaagatgacaaatatagacaagatttg 27590670  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
    |||    |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27590669 gttttggtatacttccatacgagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatttggaatgctga 27590578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 27703995 - 27703832
Alignment:
Q  26 gcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaatt 125  Q
    |||||||||||||||||||||||  ||| |||||| |||||| | ||||||||| ||||||||||| |||||||||| |||||   |||||||||| |      
T  27703995 gcatctcttaaagaattgaatctccgttattgtgagagtctcgatagttttccagaattattatgcaagatgacaaatatagataatatttggttgcagc 27703896  T
Q  126 atagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    ||| | | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  27703895 atacttctataggagaactgccattttcatttcaaaatctcagtgaacttgatgagttatcagt 27703832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 28788759 - 28788950
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    |||| |||||||| ||||| ||||||||||| | |  |||||  |||||||||||||||||||||||||||||| |||||||||| ||  |    |||||    
T  28788759 tagggttggcatcccttaatgaattgaatctctctcattgtgggagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttg 28788858  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
    |||| |  ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||    
T  28788859 gttgcagaatacttccataagagaattgccatcttcatttcaaaatctcagtgaacttcatgagttaacagtacgggaagctggaatgctga 28788950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 27716286 - 27716115
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    ||||||||||||||||||| |||||||||||  ||| |||    |||||||||||||||||| ||||||||||| |||||||||| ||||||  ||||||    
T  27716286 taggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttg 27716187  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    ||||  | ||| | ||||||||||| |||||| ||||||||||||||| ||||||||| || ||||||||||    
T  27716186 gttgtgtaatacttccataggagaactgccattttcatttcaaaatcttagtgaacttcataagttatcagt 27716115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 28794783 - 28794970
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    |||| |||||||||||||| |||||| |||| | || |||||| |||||||||| ||||||||||||||||||| |||||||||| ||  |    ||| |    
T  28794783 tagggttggcatctcttaacgaattggatctctctttttgtgagagtctcaagaattttccaaaattattatgcaagatgacaaatatcaaagagattgg 28794882  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatg 205  Q
      |   ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  28794883 tatatcttatacttccataggagaattgccatcttcatttcaaaatctcaatgaacttgatgagttatcagtagtggaatgtggaatg 28794970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 27608906 - 27608735
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    |||||||||||||||||||  ||||||||||  || ||||||| |||||| | ||||||||| ||||||||||| |||||||||| ||||||  |||||     
T  27608906 taggtttggcatctcttaagaaattgaatctcagtggttgtgagagtctcgatagttttccagaattattatgcaagatgacaaagatagacaatatttt 27608807  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    ||||| |  || | ||||| ||||| |||||| ||||||||||||||||||||||||| | |||||||||||    
T  27608806 gttgattagtacttccataagagaactgccattttcatttcaaaatctcagtgaacttcaagagttatcagt 27608735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 31286950 - 31287141
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    ||||||||||||||||||| |||||| | || | || |||||  |||||||| ||||||||| ||||||||||| |||||||||| ||| |  ||||||     
T  31286950 taggtttggcatctcttaaggaattggaactctctttttgtgtgagtctcaatagttttccagaattattatgcaagatgacaaatataaaacgtatttt 31287049  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
    |||   | ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||  |  ||||||||||||||    
T  31287050 gtttgttaatacttccataggagaattgccatcttcatttcaaaatctcagtgaacttaatgacatatcaatagagagatgtggaatgctga 31287141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 27675366 - 27675172
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacat-----agactgt 112  Q
    |||| |||||||||||||| ||| || || | |||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||     ||| ||     
T  27675366 tagggttggcatctcttaaggaactggatatctgttgttgttcgagtctcaagagttttccagaattattatgcaagatgacaaatatcaaagagattga 27675267  T
Q  113 atttggttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
     || | ||  | ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  27675266 tttagattataatatat--ccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaagctagaatgctga 27675172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 26826241 - 26826354
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |  | ||||| ||| || ||| | ||||||||||||||||||||||||||| ||    
T  26826241 agtctcaagagttttccaaaattattatgtgagatgacaaaaataaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttcgaa 26826340  T
Q  162 atctcagtgaactt 175  Q
    |||||| |||||||    
T  26826341 atctcaatgaactt 26826354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 25076269 - 25076382
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||| ||| ||||||||||  |  |  |||||| |||| |   || | |||||||||||||||||| |||||||||||    
T  25076269 agtctcaagagttttccagaattattgtgcaagatgacaaatttgaaaagtattttgttggacggtacttccataggagaattgccattttcatttcaaa 25076368  T
Q  162 atctcagtgaactt 175  Q
    ||||||||||||||    
T  25076369 atctcagtgaactt 25076382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 26851087 - 26851200
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||    |||  |||  ||  || | |||||||||||||||||||||||||| |||    
T  26851087 agtctcaagaattttccagaattattatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcatttaaaa 26851186  T
Q  162 atctcagtgaactt 175  Q
    ||||||||||||||    
T  26851187 atctcagtgaactt 26851200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 27425338 - 27425225
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| | | ||| | ||||||  | | | ||||||||||||| |||| ||| |||||||    
T  27425338 agtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaa 27425239  T
Q  162 atctcagtgaactt 175  Q
    |||| |||||||||    
T  27425238 atcttagtgaactt 27425225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 27681472 - 27681529
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||    
T  27681472 ccataggagaactgccattttcatttcaaaatctcagtgaacttcatgagttaacagt 27681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 27696263 - 27696212
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagtt 183  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  27696263 ccataggaaaactgccattttcatttcaaaatctcagtgaacttgatgagtt 27696212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 25513293 - 25513406
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||| ||||||| ||||||||||  |||||||||| ||| |   ||||  | |  || ||| | |||||| |||||||||||||||||||||||    
T  25513293 agtctcaagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatcttcatttcaaa 25513392  T
Q  162 atctcagtgaactt 175  Q
    || |||||||||||    
T  25513393 atttcagtgaactt 25513406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 26648972 - 26649013
Alignment:
Q  134 ataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  26648972 ataggagaattgccatcttcatttcataatctcagtgaactt 26649013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 26754940 - 26754981
Alignment:
Q  134 ataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  26754940 ataggagaattgccatcttcatttcataatctcagtgaactt 26754981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 27529017 - 27528904
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| | | ||| | ||||||  | | | |||||| | |||| | |||||| |||||||    
T  27529017 agtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccatagaaaaatttcaatcttcctttcaaa 27528918  T
Q  162 atctcagtgaactt 175  Q
    |||| |||||||||    
T  27528917 atcttagtgaactt 27528904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 26979898 - 26979941
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  26979898 ccataggagaattgccattttcatttcaatatctcagtgaactt 26979941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 27602465 - 27602352
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| ||||||||||  || |   ||||||||||||| | | |  |||    ||||| |||| |||| ||||||    
T  27602465 agtctcaagagttttccagaattattatgcaagatgacaaatttaaaagatatttggttgaatgaaacttgcat---ggaatttccattttcaattcaaa 27602369  T
Q  162 atctcagtgaacttgat 178  Q
    |||||||||||||||||    
T  27602368 atctcagtgaacttgat 27602352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 26058325 - 26058438
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||| ||||||| |||||||||| ||||||||||| ||| |   ||||  | |  || ||| | |||||| ||||||||||| |||||||||||    
T  26058325 agtctcaagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 26058424  T
Q  162 atctcagtgaactt 175  Q
    || ||||| |||||    
T  26058425 atttcagtaaactt 26058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 26078295 - 26078408
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||| ||||||| |||||||||| ||||||||||| ||| |   ||||  | |  || ||| | |||||| ||||||||||| |||||||||||    
T  26078295 agtctcaagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 26078394  T
Q  162 atctcagtgaactt 175  Q
    || ||||| |||||    
T  26078395 atttcagtaaactt 26078408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 27662958 - 27662845
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| ||||| |||| ||| |    ||||||||   | ||| | |||||| |||| |||||| ||||||| |||    
T  27662958 agtctcaagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgatacttccatagaagaaatgccattttcatttaaaa 27662859  T
Q  162 atctcagtgaactt 175  Q
    |||||| |||||||    
T  27662858 atctcaatgaactt 27662845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 26961599 - 26961643
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaacttg 176  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||    
T  26961599 ccataggagaatttccattttcatttcaatatctcagtgaacttg 26961643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 25547379 - 25547426
Alignment:
Q  55 ttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaa 102  Q
    |||||| |||||||||| ||||||| ||||||||||| ||||||||||    
T  25547379 ttgtgagagtctcaagaattttccagaattattatgcaagatgacaaa 25547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 25582195 - 25582238
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||    
T  25582195 ccatagaagaattgccatattcatttcaaaatttcagtgaactt 25582238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 26864096 - 26864139
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||    
T  26864096 ccataagagaattgtcattttcatttcaaaatctcagtgaactt 26864139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 26886597 - 26886640
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||    
T  26886597 ccataggaggattgccattttcatttgaaaatctcagtgaactt 26886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 26952265 - 26952308
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaactt 175  Q
    |||||||||||||||||| |||||||  ||||||||||||||||    
T  26952265 ccataggagaattgccattttcatttggaaatctcagtgaactt 26952308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 26952189 - 26952235
Alignment:
Q  56 tgtgatagtctcaagagttttccaaaattattatgcgagatgacaaa 102  Q
    ||||| ||||||||||| |||||| ||||||||||| ||||||||||    
T  26952189 tgtgagagtctcaagagctttccagaattattatgcaagatgacaaa 26952235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 26961523 - 26961569
Alignment:
Q  56 tgtgatagtctcaagagttttccaaaattattatgcgagatgacaaa 102  Q
    |||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  26961523 tgtgatagtctcaaaagttttccagaattattatgccaaatgacaaa 26961569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 25485469 - 25485509
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaa 172  Q
    |||||| ||||||||||| ||||||||||||| ||||||||    
T  25485469 ccatagaagaattgccatattcatttcaaaatttcagtgaa 25485509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 11440 - 11249
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    |||| |||||||| ||||| ||||||||||| | |  |||||  |||||||||||||||||||||||||||||| |||||||||| ||  |    |||||    
T  11440 tagggttggcatcccttaatgaattgaatctctctcattgtgggagtctcaagagttttccaaaattattatgcaagatgacaaatattaaaaagatttg 11341  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
    |||| |  ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||    
T  11340 gttgcagaatacttccataagagaattgccatcttcatttcaaaatctcagtgaacttcatgagttaacagtacgggaagctggaatgctga 11249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 2469 - 2286
Alignment:
Q  26 gcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacat-agactgtatttggttgaat 124  Q
    ||||| ||||| ||||||||| | | || |||||| |||||||||||||||||||||||||||||| |||||||||| || | | || ||||||||| |     
T  2469 gcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaatg-atttggttgcag 2371  T
Q  125 tatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
     | | | ||||| |||||||||||||||||||||||||||||| |||||||  |  |||| |  || ||||||||||||||||||    
T  2370 aaaacttccataagagaattgccatcttcatttcaaaatctcaatgaactttttctgttaacgctatgggaatgtggaatgctga 2286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 15659 - 15830
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    ||||||||||||||||||| |||||||||||  ||| |||    |||||||||||||||||| ||||||||||| |||||||||| ||||||  ||||||    
T  15659 taggtttggcatctcttaaggaattgaatctcagttcttgcaggagtctcaagagttttccagaattattatgcaagatgacaaatatagacaatatttg 15758  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    ||||  | ||| | ||||||||||| |||||| ||||||||||||||| ||||||||| || ||||||||||    
T  15759 gttgtgtaatacttccataggagaactgccattttcatttcaaaatcttagtgaacttcataagttatcagt 15830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 29271625 - 29271454
Alignment:
Q  18 taggtttggcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttg 117  Q
    ||||||||||||||||||| |||||||||||  || ||||||  |||||| | ||||||||| ||||||||||| |||||| ||| ||||||  |||||     
T  29271625 taggtttggcatctcttaaggaattgaatctcagtggttgtgtgagtctcgatagttttccagaattattatgcaagatgaaaaatatagacaatatttt 29271526  T
Q  118 gttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagt 189  Q
    |||| || ||| |  ||| | |||| | |||| ||||||||||||||||||||||||| |||||||||||||    
T  29271525 gttgcatcatactttcattgcagaacttccattttcatttcaaaatctcagtgaacttcatgagttatcagt 29271454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 22023703 - 22023808
Alignment:
Q  70 gagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaaatctcagt 169  Q
    |||||||||||||||||||||| |||||| ||| ||||| | ||||| |||| || ||| | ||||| |||||||||||||||| |||||||||||||||    
T  22023703 gagttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatacttccataagagaattgccatcttcttttcaaaatctcagt 22023802  T
Q  170 gaactt 175  Q
     |||||    
T  22023803 aaactt 22023808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 9917 - 10100
Alignment:
Q  26 gcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaatt 125  Q
    ||||| ||||| ||||||||| | | || |||||| |||||||||||||||||||||||||||||| |||||||||| ||  |    ||||||||| |      
T  9917 gcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaatatgaaaacgatttggttgcaga 10016  T
Q  126 atagtcccataggagaattgccatcttcatttcaaaatctcagtgaacttgatgagttatcagtacgggaatgtggaatgctga 209  Q
    | | | ||||| |||||||||||||||||||||||||||||| |||||||  | ||||| |  || ||||||||||||||||||    
T  10017 aaacttccataagagaattgccatcttcatttcaaaatctcaatgaactttttcagttaacgctatgggaatgtggaatgctga 10100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 17990955 - 17990853
Alignment:
Q  68 aagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaaatctca 167  Q
    |||||||||||| ||||||||||| |||||||||| |||||   ||||||||||    ||||| |||||||||||||||||| |||||||||||||||||    
T  17990955 aagagttttccagaattattatgcaagatgacaaagatagaacatatttggttggcagatagttccataggagaattgccattttcatttcaaaatctca 17990856  T
Q  168 gtg 170  Q
    |||    
T  17990855 gtg 17990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 266073 - 265960
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||| || |||||||||||||||||| |||||||||| |||||   ||||| |||| || | | | ||||| ||||||||||||||||||||||||    
T  266073 agtctcaatagctttccaaaattattatgcaagatgacaaatatagaaaatattttgttgtatgaaacttccataagagaattgccatcttcatttcaaa 265974  T
Q  162 atctcagtgaactt 175  Q
    ||||||||| ||||    
T  265973 atctcagtggactt 265960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 28125441 - 28125322
Alignment:
Q  56 tgtgatagtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcat 155  Q
    ||||| |||||||||||||||||| |||||||| || |||||||||| |||||    |||||||||  |   | | ||||| ||||||| |||| |||||    
T  28125441 tgtgagagtctcaagagttttccagaattattaggcaagatgacaaatatagaagagatttggttgcgtggaacttccataagagaattaccattttcat 28125342  T
Q  156 ttcaaaatctcagtgaactt 175  Q
    ||||||||||||||||||||    
T  28125341 ttcaaaatctcagtgaactt 28125322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 26138422 - 26138466
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcagtgaacttg 176  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||    
T  26138422 ccataggagaattgccattttcatttcaaaatttcagtgaacttg 26138466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 62025 - 62138
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| | | ||| | ||||||  | | | ||||||||||||| |||| ||| |||||||    
T  62025 agtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaa 62124  T
Q  162 atctcagtgaactt 175  Q
    |||| |||||||||    
T  62125 atcttagtgaactt 62138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 18076217 - 18076330
Alignment:
Q  62 agtctcaagagttttccaaaattattatgcgagatgacaaacatagactgtatttggttgaattatagtcccataggagaattgccatcttcatttcaaa 161  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| | | ||| | ||||||  | | | ||||||||||||| |||| ||| |||||||    
T  18076217 agtctcaagagttttccagaattattatgcaagatgacaaatataaaatctatcttgttgaaggaaacttccataggagaatttccattttcctttcaaa 18076316  T
Q  162 atctcagtgaactt 175  Q
    |||| |||||||||    
T  18076317 atcttagtgaactt 18076330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 18653106 - 18653072
Alignment:
Q  209 aatgataaaatgtattctataatgttttcaaatgt 243  Q
    ||||| |||||||||||||||||||||||||||||    
T  18653106 aatgagaaaatgtattctataatgttttcaaatgt 18653072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 18721702 - 18721668
Alignment:
Q  209 aatgataaaatgtattctataatgttttcaaatgt 243  Q
    ||||| |||||||||||||||||||||||||||||    
T  18721702 aatgagaaaatgtattctataatgttttcaaatgt 18721668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 18726623 - 18726589
Alignment:
Q  209 aatgataaaatgtattctataatgttttcaaatgt 243  Q
    ||||||||||||||||| |||||||||||||||||    
T  18726623 aatgataaaatgtattcaataatgttttcaaatgt 18726589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 18729124 - 18729090
Alignment:
Q  209 aatgataaaatgtattctataatgttttcaaatgt 243  Q
    ||||| |||||||||||||||||||||||||||||    
T  18729124 aatgagaaaatgtattctataatgttttcaaatgt 18729090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 18687242 - 18687209
Alignment:
Q  210 atgataaaatgtattctataatgttttcaaatgt 243  Q
    |||||||||||||||||| |||||||||||||||    
T  18687242 atgataaaatgtattctacaatgttttcaaatgt 18687209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 18682427 - 18682391
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcag 168  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  18682427 ccataagagaattgccattttcatttcaaaatctcag 18682391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 18726703 - 18726667
Alignment:
Q  132 ccataggagaattgccatcttcatttcaaaatctcag 168  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  18726703 ccataagagaattgccattttcatttcaaaatctcag 18726667  T

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Target: scaffold1870 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 1198 - 1274
Alignment:
Q  26 gcatctcttaaagaattgaatctatgttgttgtgatagtctcaagagttttccaaaattattatgcgagatgacaaa 102  Q
    ||||| ||||| ||||||||| | | || |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  1198 gcatcccttaatgaattgaatatctcttattgtgagagtctcaagagttttccaaaattattatgcaagatgacaaa 1274  T

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