View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_26 (Length: 215)

Name: NF3095_low_26
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_26
NF3095_low_26
[»] chr6 (12 HSPs)
chr6 (18-203)||(33388737-33388922)
chr6 (25-174)||(33272523-33272673)
chr6 (25-131)||(33401388-33401494)
chr6 (25-172)||(33058284-33058437)
chr6 (25-172)||(33359439-33359589)
chr6 (25-174)||(33286267-33286419)
chr6 (25-170)||(33305209-33305357)
chr6 (25-131)||(33263405-33263511)
chr6 (25-172)||(9167490-9167640)
chr6 (25-84)||(31562022-31562081)
chr6 (25-131)||(33643818-33643924)
chr6 (23-131)||(33410707-33410815)
[»] chr2 (1 HSPs)
chr2 (25-172)||(17440036-17440187)
[»] scaffold1408 (1 HSPs)
scaffold1408 (25-131)||(1396-1502)
[»] scaffold0428 (1 HSPs)
scaffold0428 (25-131)||(7142-7248)
[»] chr4 (4 HSPs)
chr4 (25-131)||(31158001-31158107)
chr4 (25-135)||(31149123-31149233)
chr4 (25-126)||(31503339-31503440)
chr4 (25-61)||(31033077-31033113)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 33388922 - 33388737
Alignment:
Q  18 gaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaac 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388922 gaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaac 33388823  T
Q  118 aagaaggtattatacatttgattattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388822 aagaaggtattatacatttgattattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat 33388737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 33272673 - 33272523
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||| | | ||||||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  33272673 tatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatcaaacaactatggaaaaacaagaagg 33272574  T
Q  125 ta-ttatacatttgattattaatgtttatcttagaaatataaacaaatttg 174  Q
    ||  |||| |||  |||||||||||||||||||||||||||||||||||||    
T  33272573 tacctataaattctattattaatgtttatcttagaaatataaacaaatttg 33272523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 33401494 - 33401388
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||  || |||| |||| |||||||||||||| ||||||||||    
T  33401494 tatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtggtgtagcaacattaaacaactatggaaaaacaagaagg 33401395  T
Q  125 tattata 131  Q
    || ||||    
T  33401394 tactata 33401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 33058437 - 33058284
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||| ||||||||||||| ||| ||||||||||| ||| |||||||| |||||||||| | | ||| |||| |||||||||||||| ||||||||||    
T  33058437 tatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaagg 33058338  T
Q  125 tattatacatt---tgattattaatgttt---atcttagaaatataaacaaatt 172  Q
    || |||| |||   | ||||||||| |||   ||||||||||||||||||||||    
T  33058337 tactataaattctattattattaatatttatcatcttagaaatataaacaaatt 33058284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 33359589 - 33359439
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||| | |||||||||||||||||||| || ||| ||| |||||||| |||||||||| | | |||  ||| |||||||||||||| ||||||||||    
T  33359589 tatccttgccagtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaagg 33359490  T
Q  125 tattatacatt---tgattattaatgtttatcttagaaatataaacaaatt 172  Q
    || |||| |||   | ||||||||||||||| |||||||||||||| ||||    
T  33359489 taatataaattctcttattattaatgtttattttagaaatataaaccaatt 33359439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 33286419 - 33286267
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||| ||||||||| ||| ||||||||||| ||| |||||||| |||||||||     |||| |||| |||||||||||||  || |||||||    
T  33286419 tatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactatggagaaagaagaagg 33286320  T
Q  125 tattatacatt---tgattattaatgtttatcttagaaatataaacaaatttg 174  Q
    || |||| |||   | ||||| |||||| ||||||||||||||||||||||||    
T  33286319 tactataaattatcttattataaatgttcatcttagaaatataaacaaatttg 33286267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 33305357 - 33305209
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    |||||||| |||||||||||| ||| ||||||||||| ||| |||||||| |||||||| | |   ||| | ||  ||||||||||||  ||||||||||    
T  33305357 tatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaagg 33305258  T
Q  125 tattatacatt---tgattattaatgtttatcttagaaatataaacaaa 170  Q
    || |||| |||   | |||||||||||||||||||||||||||||||||    
T  33305257 tactataaattctcttattattaatgtttatcttagaaatataaacaaa 33305209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 33263511 - 33263405
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    |||||||  |||||||||||| ||||||||||||||| ||| |||||||| ||||||||| || | ||| |||| | |||||||||||| ||||||||||    
T  33263511 tatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaagg 33263412  T
Q  125 tattata 131  Q
    || ||||    
T  33263411 tactata 33263405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 9167640 - 9167490
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||||||||| | ||||||||| ||| ||| |||||| |  |||||||||  |  ||| |||| |||||||||||||| ||||| ||||    
T  9167640 tatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaactggagcaacattaaacaactatggaaaaacaaaaagg 9167541  T
Q  125 tattataca---tttgattattaatgtttatcttagaaatataaacaaatt 172  Q
    || |||| |   | | |||||||  |||||| |||||||||||||||||||    
T  9167540 tactataaactctcttattattaccgtttattttagaaatataaacaaatt 9167490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 31562022 - 31562081
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttg 84  Q
    ||||||||||||||||||||| ||||||||||||||  ||| |||||||| |||||||||    
T  31562022 tatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 31562081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 33643818 - 33643924
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    |||||||||| || ||||||| ||| |||||| |||| | | |||||||| ||| |||||| | | ||| |||| | |||||||||||| ||||||||||    
T  33643818 tatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaagagcaacattagacaactatggaaaaacaagaagg 33643917  T
Q  125 tattata 131  Q
    || ||||    
T  33643918 taatata 33643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 33410815 - 33410707
Alignment:
Q  23 attatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaa 122  Q
    |||||||||||  | | ||||||  |||||||||||| | ||| ||||| || |||||||||| | |||||  | |||||||||||||||| | ||||||    
T  33410815 attatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaa 33410716  T
Q  123 ggtattata 131  Q
    |||| ||||    
T  33410715 ggtactata 33410707  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 17440036 - 17440187
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatctt-gatgtatagcgacatcaaacaactatggaagaacaagaag 123  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| || ||||   ||| |||| ||| | |||||||| |||||||||    
T  17440036 tatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttggatg-ggagcaacattaaaaacctatggaaaaacaagaag 17440134  T
Q  124 gtattatacatt---tgatt-attaatgtttatcttagaaatataaacaaatt 172  Q
    |||  ||| |||   | ||| ||||||||||||||| ||||||||||||||||    
T  17440135 gtaccataaattctcttattaattaatgtttatctttgaaatataaacaaatt 17440187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 1502 - 1396
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||| ||||| |||||||||||||   ||| |||||||| ||||| ||| ||   |||  ||| |||||||||||||| ||||||||||    
T  1502 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 1403  T
Q  125 tattata 131  Q
    || ||||    
T  1402 tactata 1396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 7248 - 7142
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||| ||||| |||||||||||||   ||| |||||||| ||||| ||| ||   |||  ||| |||||||||||||| ||||||||||    
T  7248 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 7149  T
Q  125 tattata 131  Q
    || ||||    
T  7148 tactata 7142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 31158107 - 31158001
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||||||||| || ||||||| |||| | | ||||| || |||||| ||| | |||||  | ||||||||||||||||  |||||||||    
T  31158107 tatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaagg 31158008  T
Q  125 tattata 131  Q
    || ||||    
T  31158007 tactata 31158001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 31149233 - 31149123
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||||||||| |||||||||  || | | | ||||| || |||||||||| |||||||    ||||||| ||||||||  | |||||||    
T  31149233 tatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtcaaacagctatggaaagataagaagg 31149134  T
Q  125 tattatacatt 135  Q
    || ||||||||    
T  31149133 tactatacatt 31149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 31503339 - 31503440
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 124  Q
    ||||||||||||||||||||  |||||||||| || | | | ||||| ||||||||||||| |  ||||  |||| ||||| ||||| |  |||||||||    
T  31503339 tatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatcgaacaattatgggaagacaagaagg 31503438  T
Q  125 ta 126  Q
    ||    
T  31503439 ta 31503440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 31033113 - 31033077
Alignment:
Q  25 tatcctttcaagtatttgccaacaagttttcacccca 61  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  31033113 tatcctttcatgtatttgcctacaagttttcacccca 31033077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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