View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3095_low_5 (Length: 407)

Name: NF3095_low_5
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3095_low_5
NF3095_low_5
[»] chr8 (5 HSPs)
chr8 (1-161)||(10397411-10397565)
chr8 (262-392)||(10398761-10398891)
chr8 (171-250)||(10397612-10397691)
chr8 (171-250)||(10398084-10398163)
chr8 (183-250)||(10398254-10398321)
[»] chr4 (2 HSPs)
chr4 (22-89)||(24181731-24181798)
chr4 (57-92)||(37660888-37660923)
[»] chr2 (1 HSPs)
chr2 (39-96)||(12454009-12454066)
[»] chr1 (1 HSPs)
chr1 (22-89)||(16853674-16853741)
[»] chr6 (1 HSPs)
chr6 (39-97)||(20117191-20117249)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 10397411 - 10397565
Alignment:
Q  1 ccacctaactaaatgtgttgaacaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaacccct 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||| |||||||||||||||||||||||||||||||||||    
T  10397411 ccacctaactaaatgtgttgaacaccatatcatcaccaaaaaccttaaaacatta------ttggtcctctcacttatatgttgttcaacctcaacccct 10397504  T
Q  101 ccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10397505 ccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 10397565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 10398761 - 10398891
Alignment:
Q  262 ttttgttactaacattatggtagacatgcaattaatggaacgaaacaaacatctacccaatttgttgtgtcaaaaaataaataaaactagtaccctatat 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10398761 ttttgttactagcattatggtagacatgcaattaatggaacgaaacaaacatctacccaatttgttgtgtcaaaaaataaataaaactagtaccctatat 10398860  T
Q  362 atgtacatgtgagggatcatgcttttacatg 392  Q
    ||||||||||||||||| |||||||||||||    
T  10398861 atgtacatgtgagggatgatgcttttacatg 10398891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 10397612 - 10397691
Alignment:
Q  171 agaaaaaaggagatcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10397612 agaaaaaaggagatcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10397691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 10398163 - 10398084
Alignment:
Q  171 agaaaaaaggagatcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10398163 agaaaaaaggagatcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10398084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 10398254 - 10398321
Alignment:
Q  183 atcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 250  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10398254 atcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10398321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 24181731 - 24181798
Alignment:
Q  22 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 89  Q
    ||||||||||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  24181731 acaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 24181798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 37660888 - 37660923
Alignment:
Q  57 atttattgatcctctcacttatatgttgttcaacct 92  Q
    |||||||| |||||||||||||||||||||||||||    
T  37660888 atttattggtcctctcacttatatgttgttcaacct 37660923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 12454066 - 12454009
Alignment:
Q  39 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaac 96  Q
    |||| |||||||||||| |||||| | || |||||||||||||||||||||| |||||    
T  12454066 aaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaacttcaac 12454009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 16853741 - 16853674
Alignment:
Q  22 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 89  Q
    |||||| |||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  16853741 acaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 16853674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20117249 - 20117191
Alignment:
Q  39 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaacc 97  Q
    |||||||||| ||||| |||||||   | ||||||||||||||||||||||| ||||||    
T  20117249 aaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaacttcaacc 20117191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University