View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_low_6 (Length: 403)
Name: NF3095_low_6
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 36930071 - 36929691
Alignment:
| Q |
8 |
gatatgaaaaggttttgaaactcggaatccacattgaaagacacttgttgcaccgtaggtgataaggctccccagactgatgtatctccggctgactctt |
107 |
Q |
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| T |
36930071 |
gatatgaaaaggttttgaaactcggaatccacattgaaagacacctgttgcaccgtaggtgataaggctccccaaactgatgtatctccggctaactctt |
36929972 |
T |
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| Q |
108 |
caaacaaaggcctacaataaatatacaattgtttttgttagtgcaacccacccctaataatataagactgaaaattaactaaaccaaataaaaaatagtt |
207 |
Q |
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| T |
36929971 |
caaacaaaggcctgcaataaatatacaattatttttgttagtgcaacccacccctaataatgttagactgaaaattaactaaaccaaataaaaaatagtt |
36929872 |
T |
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| Q |
208 |
ttagattgatatgattatcaacttgattcacgaatcaaatgagtttaagtagaataaaaattgaattattcggatcaataaattcaatttaaacaatata |
307 |
Q |
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| T |
36929871 |
ttagattgatatgattatcaacttgattcacgaatcaaatgagtttaagtagaataaaaattgaattattcggatcaataaattcaatttaaacaatata |
36929772 |
T |
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| Q |
308 |
tagtttatctcgtttgattcatttatgtgtgattttgatttctcaaacaagttatgttaatgtttaaaactccaacttact |
388 |
Q |
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| T |
36929771 |
tagtttatctcgtttgattcatttatgtgtgattttgatttctcaaacaagttatgttaatgtttaaaactccaacttact |
36929691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 36922471 - 36922362
Alignment:
| Q |
8 |
gatatgaaaaggttttgaaactcggaatccacattgaaagacacttgttgcaccgtaggtgataaggctccccagactgatgtatctccggctgactctt |
107 |
Q |
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| T |
36922471 |
gatatgaaaagtttattaaactcagaatccacattgaaagacacttgttgcacattaggtgacaaggctccccatactgatgtctttccggctaactctt |
36922372 |
T |
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| Q |
108 |
caaacaaagg |
117 |
Q |
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| T |
36922371 |
caaacaaagg |
36922362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 36922347 - 36922283
Alignment:
| Q |
237 |
acgaatcaaatgagtttaagtagaat-aaaaattgaattattcggatcaataaattcaatttaaa |
300 |
Q |
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||||||||||||||||||||| |||| |||||||||||| | |||| ||||||||||||||||| |
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| T |
36922347 |
acgaatcaaatgagtttaagttgaataaaaaattgaattcgttggataaataaattcaatttaaa |
36922283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 36932802 - 36932876
Alignment:
| Q |
7 |
tgatatgaaaaggttttgaaactcggaatccacattgaaagacacttgttgcaccgtaggtgataaggctcccca |
81 |
Q |
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|||||| |||||||||||||| || ||||||||||| | | ||||||||||| |||||||||||||||||| |
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| T |
36932802 |
tgatataaaaaggttttgaaattcagaatccacattaagcgccacttgttgcaataaaggtgataaggctcccca |
36932876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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