View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3095_low_7 (Length: 402)
Name: NF3095_low_7
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_7 |
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| [»] scaffold0243 (1 HSPs) |
| | |
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| [»] scaffold1890 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 39867074 - 39867447
Alignment:
| Q |
18 |
agacctagccaccgcaatttacaattcagttctgcattttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39867074 |
agacctagccaccgcaatttacaattcagttctgcattttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggttt |
39867173 |
T |
|
| Q |
118 |
aattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttatttc |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39867174 |
aattccattcattcaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttatttc |
39867273 |
T |
|
| Q |
218 |
ttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcactatggccgatgcttttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39867274 |
ttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgttttcactatggccgaggcttttg |
39867373 |
T |
|
| Q |
318 |
ttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
391 |
Q |
| |
|
||| ||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
39867374 |
ttactgctgcttaattactttcacgttattgttccaaatccaaattaattgtcgttttatgctttaagttctgt |
39867447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 19243947 - 19243574
Alignment:
| Q |
18 |
agacctagccaccgcaatttacaattcagttctgcatttt-cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19243947 |
agacctagccaccacaatttacaattcagttctgcatttttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
19243848 |
T |
|
| Q |
117 |
taattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttattt |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
19243847 |
taattccattcattcaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtctcaattgtcttttattt |
19243748 |
T |
|
| Q |
217 |
cttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcactatggccgatgctttt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||| |
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|
| T |
19243747 |
cttttttaattcacattgcttctttcatattgttgtgcttatattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggc-ttt |
19243649 |
T |
|
| Q |
317 |
gttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||||||| |||||||||| |||||||||||||| ||||||| |
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|
| T |
19243648 |
gttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgctttatgttctgt |
19243574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0243 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 21396 - 21769
Alignment:
| Q |
18 |
agacctagccaccgcaatttacaattcagttctgcatttt-cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21396 |
agacctagccaccgcaatttacaattcagttttgcatttttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
21495 |
T |
|
| Q |
117 |
taattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaa-accttatttcatgcaattctgatgtttcaattgtcttttatt |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
21496 |
taattccattcattcaatttaaatctgcagccgccgattgatatataattttgaaaaaaccttatttcatgcaactctgatgtctcaattgtcttttatt |
21595 |
T |
|
| Q |
216 |
tcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgttttcactatggccgatgcttt |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| || || |
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|
| T |
21596 |
tcttttttaattcaagttgcttctttcatgttgctgtgctcatattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggc-tt |
21694 |
T |
|
| Q |
316 |
tgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
21695 |
tgttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgcttgaagttctg |
21769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1890 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold1890
Description:
Target: scaffold1890; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 431 - 151
Alignment:
| Q |
18 |
agacctagccaccgcaatttacaattcagttctgcatttt-cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
431 |
agacctagccaccgcaatttacaattcagttctgcatttttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtt |
332 |
T |
|
| Q |
117 |
taattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttattt |
216 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
331 |
taattccattcactcaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtctcaattgtcttttattt |
232 |
T |
|
| Q |
217 |
cttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattcttatgcatattgtttt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
231 |
cttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgctatgatttaattcttatgcatattgtttt |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 115 - 391
Target Start/End: Original strand, 22704654 - 22704934
Alignment:
| Q |
115 |
tttaattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttat |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22704654 |
tttaattccattcattcaatttaaatctgcagctgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttat |
22704753 |
T |
|
| Q |
215 |
ttcttttttaattcacgttgcttctttcatgttgctgtgctcctattttgctgctatgatttaattctt----atgcatattgttttcactatggccgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
22704754 |
ttcttttttaattcacgttgcttctttcatgttgttgtgctcatattttgctgttatgatttaattcttatgcatgcatactgttttcactatggccgag |
22704853 |
T |
|
| Q |
311 |
gcttttgttattgctgcttaattactttcacgttgctgctccaaatctaaattaattgccgttttatgctttaagttctgt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
22704854 |
gcttttgttattgctgcttaattactttcacgtttctgctccgaatacaaattaattgtcgttttatgctttaagttctgt |
22704934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 105960 - 105771
Alignment:
| Q |
18 |
agacctagccaccgcaatttacaattcagttctgcattttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
105960 |
agacctagccaccgcaatttacaattcacttatgcattttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggttt |
105861 |
T |
|
| Q |
118 |
aattccattcattaaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105860 |
aattccattcattcaatttaaatctgcagccgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgt |
105771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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