View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_low_8 (Length: 395)
Name: NF3095_low_8
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 32942330 - 32942550
Alignment:
| Q |
17 |
atgaagaaattaataaagtgatgggtacaaaaataataagtcgtgtttgttgggagacaacctacaataaattgtagttttttattccaccgcagtgtaa |
116 |
Q |
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| T |
32942330 |
atgaagaaattaataaagtgatgggtacaaaaataataagtcgtgtttg---ggagacaacctacaataaattgtagttttttcttccaccgcagtgtaa |
32942426 |
T |
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| Q |
117 |
catatgtgctcatgaatagtgctactgagtttgaacctattttgagggatgggggtatttggtgttaggagtctaaaaactgtgtgctgttttccaacta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942427 |
catatgtgctcatgaatagtgctactgagtttgaacctattttgagggatgggggtatttggtgttaggagtctaaaaactgtgtgctgttttccaact- |
32942525 |
T |
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| Q |
217 |
tacatacttttatcataacaccatttta |
244 |
Q |
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||||||||||||||||||||||||| |
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| T |
32942526 |
---atacttttatcataacaccatttta |
32942550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 32942642 - 32942775
Alignment:
| Q |
242 |
ttactacaatacaacagctagctatattttctcaaatttcatttgtttaatcaaaagattttactgaagaaaactagggttacatacatacctcaagaaa |
341 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942642 |
ttactacaatacaacagct----atattttctcaaatttcatttgtttaatcaaaagattttactgaagaaaactagggttacatacatacctcaagaaa |
32942737 |
T |
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| Q |
342 |
gtctttgtgtaaacgatccgggaaccaaagttttttat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32942738 |
gtctttgtgtaaacgatccgggaaccaaagttttttat |
32942775 |
T |
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