View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_low_9 (Length: 393)
Name: NF3095_low_9
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 7970225 - 7969848
Alignment:
| Q |
18 |
taatatttgctccatatgttacagatatgtattgttcttggggtatgtataatgattttagcacccattggagcattgaggagtattatacttgatgcca |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7970225 |
taatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagcattgaggagtattatacttgaagcca |
7970126 |
T |
|
| Q |
118 |
agacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctatt----------------- |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970125 |
agacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttctctatgcttttctc |
7970026 |
T |
|
| Q |
201 |
----ttctgccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgatagattc |
296 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970025 |
tattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgatagattc |
7969926 |
T |
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| Q |
297 |
aatgannnnnnnnccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
374 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969925 |
aatgattatttttccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
7969848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 8043484 - 8043670
Alignment:
| Q |
18 |
taatatttgctccatatgttacagatatgtattgttcttggggtatgtataatgattttagcacccattggagcattgaggagtattatacttgatgcca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8043484 |
taatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgaggagtattatacttgaagcca |
8043583 |
T |
|
| Q |
118 |
agacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
8043584 |
agacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttccctggacaatgatgaaatctattttct |
8043670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 8033564 - 8033734
Alignment:
| Q |
34 |
tgttacagatatgtattgttcttggggtatgtataatgattttagcacccattggagcattgaggagtattatacttgatgccaagacctaccagtttta |
133 |
Q |
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|
||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8033564 |
tgttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattgaggagtattatacttgaagccaagacctaccagtttta |
8033663 |
T |
|
| Q |
134 |
ctcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
8033664 |
ctcttgatcacctaactttgttatcataaccaagttacaacttcccttgacaatgatgatatctactttct |
8033734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 197 - 374
Target Start/End: Original strand, 8033759 - 8033936
Alignment:
| Q |
197 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgatagattc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8033759 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcatctattttgtgtgtgatagattc |
8033858 |
T |
|
| Q |
297 |
aatgannnnnnnnccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
374 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
8033859 |
aatgattttttttccaacttaagtgttttatgtgaatttggcgctgtagcatctataatagatgcttggttgaagtac |
8033936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 8043695 - 8043750
Alignment:
| Q |
197 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
8043695 |
tattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttc |
8043750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 7976821 - 7976721
Alignment:
| Q |
36 |
ttacagatatgtattgttcttggggtatgtataatgattttagcacccattggagcattgaggagtattatacttgatgccaagacctaccagttttact |
135 |
Q |
| |
|
|||||||| || ||||| ||||| |||||| ||||||||||| | || ||||| | |||||||| || ||| || | || ||||||||| ||||||||| |
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| T |
7976821 |
ttacagatctgcattgtgcttggcgtatgtttaatgattttatctcctattggtggattgaggacaatcataattaaggctaagacctacaagttttact |
7976722 |
T |
|
| Q |
136 |
c |
136 |
Q |
| |
|
| |
|
|
| T |
7976721 |
c |
7976721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 41380663 - 41380543
Alignment:
| Q |
18 |
taatatttgctccatatgttacagatatgtattgttcttggggtatgtataatgattttagcacccattggagcattgaggagtattatacttgatgcca |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
41380663 |
taatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattatccttgaagcca |
41380564 |
T |
|
| Q |
118 |
agacctaccagttttactctt |
138 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
41380563 |
agtcctaccagttttactctt |
41380543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 41380498 - 41380443
Alignment:
| Q |
197 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
252 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41380498 |
tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
41380443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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