View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3096-Insertion-1 (Length: 1187)
Name: NF3096-Insertion-1
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 678
Target Start/End: Original strand, 32747874 - 32748543
Alignment:
| Q |
8 |
gattgatgataatggagaaaacttgtacctgtctaaaagaaaattgtttgttgcagtcaccgaagacagatccacttagcatataaccagctataaaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32747874 |
gattgatgataatggagaaaacttgtacctgtctaaaagaaaattgtttgttgcagtcgccgaagacagatccacttagcatataaccagctataaaaga |
32747973 |
T |
|
| Q |
108 |
tgacaaatgacaggcaacaatagagacactccaaggggagatttaatacactcaacattaagagcaagtggtgctccagcacaaatagctgccaccaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32747974 |
tgacaaatgacaggcaacaatagagacactccaaggggagatttaatacactcaacattaagagcaagtggtgctccagcacagatagctgccaccaaca |
32748073 |
T |
|
| Q |
208 |
ctgagagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaagaagctgtnnnnnnnnnnnnnnnncaaattttgtgaaaaaacaagatcttt |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
32748074 |
ctgacagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaagaagctgtaaaaaaaaataaa----aaaatttgtgagaaaacaagatcttt |
32748169 |
T |
|
| Q |
308 |
cttggagggcacttctcttattttttgaattcatagcttggtctttcacttccattgaggatccacctc---tgtttggtttctctctttctgtggggaa |
404 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32748170 |
cttggagagcacttctcttattttttgaattcatagcttggtctttcacttccattgaggatccacctcctctgtttggtttctctctttctgtggggaa |
32748269 |
T |
|
| Q |
405 |
tagcaaacaatgggtaaaaggtaataaatgcttgaactcctaaactatgctaaatgaaaacttatgattgcccaagactccttcaaaaagatcatacatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32748270 |
tagcaaacaatgggtaaaaggtaataaatgcttgaactcctaaactatgctaaatgaaaacttatgattgcccaagactccttcaaaaagatcatacatg |
32748369 |
T |
|
| Q |
505 |
gacagaaaaaacaaaattgtgaacaacgagagcatcttatgattccaacgaagtacatttacaacaagcaagtcagattgattcaataattattcctcgt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32748370 |
gacagaaaaaacaaaattgtgaacaacgagggcatcttatgattccaacgaagtgcatttacaacaagcaagtcagattgattcaataattattcctcgt |
32748469 |
T |
|
| Q |
605 |
gatttctgagtagccaaacagttaaaacttaaaataaacactatatatcagatggcagaaagccatgcaatttc |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32748470 |
gatttctgagtagccaaacagttaaaacttaaaataaacactatatatcagatggcagaaagccatgcaatttc |
32748543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 827
Target Start/End: Original strand, 32722550 - 32723364
Alignment:
| Q |
8 |
gattgatgataatggagaaaacttgtacctgtctaaaagaaaattgtttgttgcagtcaccgaagacagatccacttagcatataaccagctataaaaga |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32722550 |
gattgatgataatggtgaaaacttgtacctgtctaaaacaaaattgcttgttgcagtcgtggaagacagatccacttagcatataatcagctataaaaga |
32722649 |
T |
|
| Q |
108 |
tgacaaatgacaggcaacaatagagacactccaaggggagatttaatacactcaacattaagagcaagtggtgctccagcacaaatagctgccaccaaca |
207 |
Q |
| |
|
|||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32722650 |
tgacaattgacaggcgacaatacagtcactccaaggggagatttaatacactcaacattaagagcaagtgctgctccagcacagatagctgccaccaaca |
32722749 |
T |
|
| Q |
208 |
ctgagagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaagaagctgtnnnnnnnnnnnnnnnncaaattttgtgaaaaaacaagatcttt |
307 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
32722750 |
ccgacagtagaggcaaaaatggtcgaaaagcgttacaaatatgaggaaagaaactgtaaaaaaataaaaa---caaattttgtgagaaaacaagatcttt |
32722846 |
T |
|
| Q |
308 |
cttggagggcacttctcttattttttgaattcatagcttggtctttcacttccattgaggatccacctc---tgtttggtttctctctttctgtggggaa |
404 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||| ||||||| |
|
|
| T |
32722847 |
cttggagagaacttctcttatgttttgaattcatagcttggtctttcacttccaatgaggatcctcctcctctggttggtttctctctttctctggggaa |
32722946 |
T |
|
| Q |
405 |
tagcaaacaatgggtaaaaggtaataaatgcttgaactcctaaactatgctaaatgaaaacttatgattgcccaagactccttcaaaaagatcatacatg |
504 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32722947 |
tagcaaacaatgggaaaagggtaataaatgtttgaactcctaaactatgctaaataaaaacttatgattgcccaagattccttcaaaaagatcatacatt |
32723046 |
T |
|
| Q |
505 |
gacagaaaaaacaaaattgtgaacaacgagagcatcttatgattccaacgaagtacatttacaacaagcaagtcagattgattcaataattattcctcgt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32723047 |
gacagaaaaaacaaaattgtgaacaacgagggcatcttatgattccaacgaagtacatatacaacaagcaagtcagactgattcaataattattcctcgt |
32723146 |
T |
|
| Q |
605 |
gatttctgagtagccaaacagttaaaacttaaaataaacactatatatcagatggcagaaagccatgca--atttcagatggcagaaagccatgcaattt |
702 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || ||| | | |||| || || |||||||| ||||||||||||||||| |
|
|
| T |
32723147 |
gatttctgagtggccaaacagttaaaacttaaaataaacacta-at---aga--gtaaaaaggtgatcagtatatcagatggaagaaagccatgcaattt |
32723240 |
T |
|
| Q |
703 |
ctatattgcataaagtcatcaacaactnnnnnnnttaagattcaaaa-gtgctgaattagccaatagtgagatgtgcgctttattaaaacagca-ggaca |
800 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||| |||||||||||| |||| ||||| |
|
|
| T |
32723241 |
ctatattgcataaagtcatcaacaatcaaaaaaattaagattcaaaaggtgctgaatta---acaggtgagttgtgagctttattaaaagagcagggaca |
32723337 |
T |
|
| Q |
801 |
tataatatgattgaggcacttaagaat |
827 |
Q |
| |
|
|||||||||| |||| ||||||||||| |
|
|
| T |
32723338 |
tataatatgactgagccacttaagaat |
32723364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 827
Target Start/End: Original strand, 32731005 - 32731819
Alignment:
| Q |
8 |
gattgatgataatggagaaaacttgtacctgtctaaaagaaaattgtttgttgcagtcaccgaagacagatccacttagcatataaccagctataaaaga |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32731005 |
gattgatgataatggtgaaaacttgtacctgtctaaaacaaaattgcttgttgcagtcgtggaagacagatccacttagcatataatcagctataaaaga |
32731104 |
T |
|
| Q |
108 |
tgacaaatgacaggcaacaatagagacactccaaggggagatttaatacactcaacattaagagcaagtggtgctccagcacaaatagctgccaccaaca |
207 |
Q |
| |
|
|||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32731105 |
tgacaattgacaggcgacaatacagtcactccaaggggagatttaatacactcaacattaagagcaagtgctgctccagcacagatagctgccaccaaca |
32731204 |
T |
|
| Q |
208 |
ctgagagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaagaagctgtnnnnnnnnnnnnnnnncaaattttgtgaaaaaacaagatcttt |
307 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
32731205 |
ccgacagtagaggcaaaaatggtcgaaaagcgttacaaatatgaggaaagaaactgtaaaaaaataaaaa---caaattttgtgagaaaacaagatcttt |
32731301 |
T |
|
| Q |
308 |
cttggagggcacttctcttattttttgaattcatagcttggtctttcacttccattgaggatccacctc---tgtttggtttctctctttctgtggggaa |
404 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||| ||||||| |
|
|
| T |
32731302 |
cttggagagaacttctcttatgttttgaattcatagcttggtctttcacttccaatgaggatcctcctcctctggttggtttctctctttctctggggaa |
32731401 |
T |
|
| Q |
405 |
tagcaaacaatgggtaaaaggtaataaatgcttgaactcctaaactatgctaaatgaaaacttatgattgcccaagactccttcaaaaagatcatacatg |
504 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32731402 |
tagcaaacaatgggaaaagggtaataaatgtttgaactcctaaactatgctaaataaaaacttatgattgcccaagattccttcaaaaagatcatacatt |
32731501 |
T |
|
| Q |
505 |
gacagaaaaaacaaaattgtgaacaacgagagcatcttatgattccaacgaagtacatttacaacaagcaagtcagattgattcaataattattcctcgt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32731502 |
gacagaaaaaacaaaattgtgaacaacgagggcatcttatgattccaacgaagtacatatacaacaagcaagtcagactgattcaataattattcctcgt |
32731601 |
T |
|
| Q |
605 |
gatttctgagtagccaaacagttaaaacttaaaataaacactatatatcagatggcagaaagccatgca--atttcagatggcagaaagccatgcaattt |
702 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || ||| | | |||| || || |||||||| ||||||||||||||||| |
|
|
| T |
32731602 |
gatttctgagtggccaaacagttaaaacttaaaataaacacta-at---aga--gtaaaaaggtgatcagtatatcagatggaagaaagccatgcaattt |
32731695 |
T |
|
| Q |
703 |
ctatattgcataaagtcatcaacaactnnnnnnnttaagattcaaaa-gtgctgaattagccaatagtgagatgtgcgctttattaaaacagca-ggaca |
800 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||| |||||||||||| |||| ||||| |
|
|
| T |
32731696 |
ctatattgcataaagtcatcaacaatcaaaaaaattaagattcaaaaggtgctgaatta---acaggtgagttgtgagctttattaaaagagcagggaca |
32731792 |
T |
|
| Q |
801 |
tataatatgattgaggcacttaagaat |
827 |
Q |
| |
|
|||||||||| |||| ||||||||||| |
|
|
| T |
32731793 |
tataatatgactgagccacttaagaat |
32731819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 677 - 1044
Target Start/End: Original strand, 32748517 - 32748893
Alignment:
| Q |
677 |
tcagatggcagaaagccatgcaatttctatattgcataaagtcatcaacaactnnnnnnnttaagattcaaaag-tgctgaattagccaatag-tgagat |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
32748517 |
tcagatggcagaaagccatgcaatttctatattgcataaaatcatcaacaactaaaaaaattaagattcaaaaggtgctgaattagccaataggtgagat |
32748616 |
T |
|
| Q |
775 |
gtgcgctttattaaaacagca-ggacatataatatgattgaggcacttaagaatactacaactactacttttatagccaaaggcacttagcatcttcatt |
873 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32748617 |
gtgcgctttattaaaacagcaaggacatataatatgattgaggcacttaagaatagtactactactacttttatagccaaaggcacttagcatcttcatt |
32748716 |
T |
|
| Q |
874 |
tgtaagaaacaaacaaacaaaggccaaggctagatataatgtatgca-ggataaatgttttacttagtgagaat-aaacttgactgcattacagttt--a |
969 |
Q |
| |
|
||||| |||||||||||||||| | | |||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
32748717 |
tgtaacaaacaaacaaacaaagccaagggctagatttaatgtatgcagggataaatgttttacctagtgagaataaaacttgactgcattacagttttaa |
32748816 |
T |
|
| Q |
970 |
tcgcagaacaaagtgattgccgaaattg-aaaagctcctgatattattatc-aaagctgtgttaaat-aagctcttgc |
1044 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
32748817 |
tcgcagaacaaagtgattgcagaaattgaaaaagct-ctgatattattatcaaaagctgtgttaaataaagctcttgc |
32748893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 888 - 1044
Target Start/End: Original strand, 32723470 - 32723630
Alignment:
| Q |
888 |
aaacaaaggccaaggctagatataatgtatgcagga-taaatgttttacttagtgagaat-aaacttgactgcattacagttt--atcgcagaacaaagt |
983 |
Q |
| |
|
|||||||| | | |||||||||| ||||||||||| |||||||||||| | ||||| || |||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
32723470 |
aaacaaagccaagggctagatatgatgtatgcaggggtaaatgttttacctggtgaggatgaaacatgactgcattacagttttaatcgcagaacatagt |
32723569 |
T |
|
| Q |
984 |
gattgccgaaattgaaaagctcctgatattattatc-aaagctgtgttaaat-aagctcttgc |
1044 |
Q |
| |
|
||||| |||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
32723570 |
aattgcagaaattgaaaag--gcttatattattatcaaaagctgtgttaaataaagctcttgc |
32723630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 888 - 1044
Target Start/End: Original strand, 32731925 - 32732085
Alignment:
| Q |
888 |
aaacaaaggccaaggctagatataatgtatgcagga-taaatgttttacttagtgagaat-aaacttgactgcattacagttt--atcgcagaacaaagt |
983 |
Q |
| |
|
|||||||| | | |||||||||| ||||||||||| |||||||||||| | ||||| || |||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
32731925 |
aaacaaagccaagggctagatatgatgtatgcaggggtaaatgttttacctggtgaggatgaaacatgactgcattacagttttaatcgcagaacatagt |
32732024 |
T |
|
| Q |
984 |
gattgccgaaattgaaaagctcctgatattattatc-aaagctgtgttaaat-aagctcttgc |
1044 |
Q |
| |
|
||||| |||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
32732025 |
aattgcagaaattgaaaag--gcttatattattatcaaaagctgtgttaaataaagctcttgc |
32732085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 32752171 - 32752292
Alignment:
| Q |
121 |
gcaacaatagagacactccaaggggagatttaatacactcaacattaagagcaagtggtgctccagcacaaatagctgccaccaacactgagagtagagg |
220 |
Q |
| |
|
|||||| || ||| ||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||| || ||||||||||| |||| | || | |
|
|
| T |
32752171 |
gcaacagtatagaaactccaaggggagatttaatagactccacattaagagcgagtggcactccagcacagatctctgccaccaacgctgacggaggaag |
32752270 |
T |
|
| Q |
221 |
caaaaatggtcgaaaagcgtta |
242 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
32752271 |
caaaaatgatcgaaaagcgtta |
32752292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 32753076 - 32753128
Alignment:
| Q |
69 |
gaagacagatccacttagcatataaccagctataa----aagatgacaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32753076 |
gaagacagatccacttagcatataaccagctataaataaaagatgacaaatga |
32753128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 32746907 - 32747005
Alignment:
| Q |
165 |
ttaagagcaagtggtgctccagcacaaatagctgccaccaacactgagagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaagaagctgt |
264 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||| ||||| || || ||| ||||||||| |||| || | | |||||| ||||||||||||||||| |
|
|
| T |
32746907 |
ttaagagcaagtggtgctccagcagagagagctgctaccaatacagatagttaaggcaaaaacggtcaaatatc-ttacaagtatgaggaaagaagctgt |
32747005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 330 - 647
Target Start/End: Complemental strand, 6061102 - 6060780
Alignment:
| Q |
330 |
ttttgaattcatagcttggtctttcacttccattgaggatccacctc---tgtttggtttctctctttctgtggggaatagcaaacaatgggtaaaaggt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
6061102 |
ttttgaattcatagcttggtctttcacttccattgaggaccctcctcctttgtttggtttatctctttctgtggggaatagcaaacaagaggaaaaaggt |
6061003 |
T |
|
| Q |
427 |
--aataaatgcttgaactcctaaactatgctaaatgaaaacttatgattgcccaagactccttcaaaaagatcatacatggacagaaaaaacaaaattgt |
524 |
Q |
| |
|
|| ||||| ||||| |||||| ||||||||| ||| |||| || |||||| ||||||||||||||||| ||||||||||||||||||| |||| | |
|
|
| T |
6061002 |
taaaaaaatgtttgaattcctaatgtatgctaaacgaatacttctggttgcccgagactccttcaaaaagaccatacatggacagaaaaaataaaacggc |
6060903 |
T |
|
| Q |
525 |
gaacaacgagagcatcttatgattccaacgaagtacatttacaacaagcaagtcagattgattcaataattattcctcgtgatttctgagtagccaaaca |
624 |
Q |
| |
|
||||||||||||| ||||||||| |||| || |||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||| | | |||||| |
|
|
| T |
6060902 |
aaacaacgagagcaccttatgattgcaacaaattacagttacaacaagcaagtcagacagattcaataattattccttgtgttttctgactggtcaaaca |
6060803 |
T |
|
| Q |
625 |
gttaaaacttaaaataaacacta |
647 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
6060802 |
gttaaaacttaaaatcaacacta |
6060780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 834 - 1036
Target Start/End: Complemental strand, 6060517 - 6060305
Alignment:
| Q |
834 |
actactacttttatagccaaaggcacttagcatcttcatttgtaagaaacaaacaaa----caaagg-ccaaggct-agatataatgtatgcagga-taa |
926 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||| |||||| |||| ||| | |||||| | |||||| |||||||| ||| ||| |
|
|
| T |
6060517 |
actactacttctatagccaaaggcacgtagcattttcatttgtaacaaacaagcaaagctgcaatgttccaagggttagatatgatgtatgcgggaataa |
6060418 |
T |
|
| Q |
927 |
atgttttacttagtgagaataaa-cttgactgcattacagttt--atcgcagaacaaagtgattgccgaaattgaaaagctcctgatattattatc-aaa |
1022 |
Q |
| |
|
||||||||| ||||||| |||| | ||||||||||||||| | ||| ||||||| || ||||| |||| |||||||||| ||||||||||||| ||| |
|
|
| T |
6060417 |
atgttttacctagtgaggttaaaacatgactgcattacagtgttaatcacagaacatggtaattgcagaaactgaaaagctc-tgatattattatccaaa |
6060319 |
T |
|
| Q |
1023 |
gctgtgttaaataa |
1036 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6060318 |
gctgtgttaaataa |
6060305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 1e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 3282458 - 3282253
Alignment:
| Q |
69 |
gaagacagatccacttagcatataaccagctataaaagatgacaaatgacaggcaacaatag----------agacactccaaggggagatttaatacac |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| | ||| | |||||||||||||||||||||| |
|
|
| T |
3282458 |
gaagacagatccacttagcatatagccagctataaaagctgacaaatgaaaggcaacaacaagcaacaaaatagaaattccaaggggagatttaatacac |
3282359 |
T |
|
| Q |
159 |
tcaacattaagagcaagtggtgctccagcacaaatagctgccaccaacactgagagtagaggcaaaaatggtcgaaaagcgttacaaagatgaggaaaga |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||| ||| || |||| | ||||||||| |
|
|
| T |
3282358 |
tcaacattaagagcaagtggtgctccagcacagatagctgccgtcaacacagagagtggaggcaaaaatggtcgaatagcattgcaaataggaggaaaga |
3282259 |
T |
|
| Q |
259 |
agctgt |
264 |
Q |
| |
|
|||||| |
|
|
| T |
3282258 |
agctgt |
3282253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 3282534 - 3282486
Alignment:
| Q |
12 |
gatgataatggagaaaacttgtacctgtctaaaagaaaattgtttgttg |
60 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
3282534 |
gatgaaaatggagaaaacttgtacctgtctcaaaggaaattgttcgttg |
3282486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 3286541 - 3286460
Alignment:
| Q |
165 |
ttaagagcaagtggtgctccagcacaaatagctgccaccaacactgagagtagaggcaaaaatggtcgaaaagcgttacaaa |
246 |
Q |
| |
|
|||||||| ||||||||||| ||| | | |||||| ||||| ||||| ||| |||||||||| || |||| ||| ||||||| |
|
|
| T |
3286541 |
ttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgatagtggaggcaaaaacggccgaatagcattacaaa |
3286460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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