View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-10 (Length: 570)
Name: NF3096-Insertion-10
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 3626490 - 3625934
Alignment:
| Q |
8 |
catccttcaagaaatgtggtggagataatctttcacactagctggggacccaaaccgttttcgggtcgggttgaaatgattttcaaggttcacaatggtt |
107 |
Q |
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| T |
3626490 |
catccttcaagaaatgtggtggagataatttttcacactagctggggacccaaaccgttttcgggtcgggttgaaatgattttcaaggttcacaatggtt |
3626391 |
T |
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| Q |
108 |
caagaacggtgactcggtttgaagagtatcgcgaaacggtgaaaactcgacccgggtcgaggaaccatgaagagaatgcaaggtgtgttgctgatgggaa |
207 |
Q |
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| T |
3626390 |
caagaacggtgactcggtttgaagagtatcgcgaaacggtgaaaacccgacccgggtcgaggaaccatgaagagaatgctaggtgtgttgctgatgggaa |
3626291 |
T |
|
| Q |
208 |
tgaagtaatgaggtttcattgtttgggacccacttccggtggtggtccctacggtggagcgtgtgtggggtcgtttccaggtgggaaaggtacagcggcg |
307 |
Q |
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| T |
3626290 |
tgaagtaatgaggtttcattgtttgggacccacttccggtggtggtccctacggtggagcttgtgtggggtcgtttccaggtgggaaaggtacagcagcg |
3626191 |
T |
|
| Q |
308 |
atctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttggtttgtcgggtcatagcgggtagggttt |
407 |
Q |
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| T |
3626190 |
atctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttggtttgtcgggtcatagcgggtagggttt |
3626091 |
T |
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| Q |
408 |
ccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgatcatggtgagttgttggtcttttgactcccgtg |
507 |
Q |
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| T |
3626090 |
ccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgataatggtgagttgttggtc-tttgactcgcgtg |
3625992 |
T |
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| Q |
508 |
ctgtttttgccttgttttcttattcttttataggtttgtcaaaattatttggaggtttttt |
568 |
Q |
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||| |||||||||||||||||| || |||||||| |||| |||||||||||||| |||||| |
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| T |
3625991 |
ctg-ttttgccttgttttctta-tcatttatagg-ttgtaaaaattatttggagttttttt |
3625934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 302 - 531
Target Start/End: Original strand, 41957986 - 41958204
Alignment:
| Q |
302 |
gcggcgatctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttggtttgtcgggtcatagcgggta |
401 |
Q |
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| T |
41957986 |
gcggcgatatgtacattttccgggagcggtggtgcgcatgagaatagcgggggtgggaaaggaagaatggcgatgttggtgtgtagggttgttgcgggtc |
41958085 |
T |
|
| Q |
402 |
gggtttccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgatcatggtgagttgttggtcttttgact |
501 |
Q |
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| T |
41958086 |
gggtttctaagcgggttgggtatttggatt---------ataaacgagttgggtttgactcagtgagtggtgataatggtgagttattggt-gtttgact |
41958175 |
T |
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| Q |
502 |
cccgtgctgtttttgccttgttttcttatt |
531 |
Q |
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| T |
41958176 |
cgcgtgc-ggtattgccttgttttcttatt |
41958204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 41957875 - 41957930
Alignment:
| Q |
179 |
gagaatgcaaggtgtgttgctgatgggaatgaagtaatgaggtttcattgtttggg |
234 |
Q |
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| T |
41957875 |
gagaatgcaaggtgtgttgctgatggaaatgaagtgatgcagtttcattgtttggg |
41957930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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