View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-11 (Length: 400)
Name: NF3096-Insertion-11
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 13713956 - 13713552
Alignment:
| Q |
8 |
ttttatttatgcaagtgtattatagttatttggtttggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccatt |
95 |
Q |
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| T |
13713956 |
ttttatttatgcaagtgtattatagttatttggtttggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccatt |
13713857 |
T |
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| Q |
96 |
aatctcaaaactaaaaacacatacaatatgaatctctctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacacca |
195 |
Q |
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| T |
13713856 |
aatctcaaaactaaaaacacatacaatatgaatctctctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacacca |
13713757 |
T |
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| Q |
196 |
cacttcttatctatcttaccttacttgtcatcaaaactaccatggttgaagctcaatgacacttcaaaaggactaatattaaaaggcctctgaccaatat |
295 |
Q |
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| T |
13713756 |
cacttcttatctatcttaccttacttgtcatcaaaactaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatat |
13713657 |
T |
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| Q |
296 |
aattaccaggtggatcatagttacaactaataatggtgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaac |
395 |
Q |
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| T |
13713656 |
aattaccaggtggatcatagttacaactaataatggtgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaac |
13713557 |
T |
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| Q |
396 |
ttgag |
400 |
Q |
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| T |
13713556 |
ttgag |
13713552 |
T |
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