View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-13 (Length: 412)
Name: NF3096-Insertion-13
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 32967555 - 32967138
Alignment:
| Q |
8 |
gccactatggtgcttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggacta |
107 |
Q |
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| T |
32967555 |
gccactatggt-cttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggacta |
32967457 |
T |
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| Q |
108 |
aaaaagtaccattctttctcaccaaatgaagccttagctgaaaataaagaaacaacaacaaaccaaaagtaaattaaccttccacatcacacattatta- |
206 |
Q |
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| T |
32967456 |
aaaaagtaccattctttctcaccaaatgaagccttagctgaaaataaagaaaccacaacaaaccaaaagtaaattaaccttccacatcacacattattaa |
32967357 |
T |
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| Q |
207 |
-------------agtataaaaaagtacatacgtatattttggatcaacttataaatttatagaatacaaacctggtaaatcccaaggatccaacttata |
293 |
Q |
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| T |
32967356 |
attaaaaaaaagtaatataaaaaagtacatacgtatattttggatcaacttataaatttatagaatacaaacctggtaaatcccaaggatccaacttata |
32967257 |
T |
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| Q |
294 |
aatatcaacttcggcaatgatggaaacaggcaagggaatggaggcaannnnnnncctaaggtagtgaagaatgagttctgcatcagtagggtggaaccta |
393 |
Q |
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| T |
32967256 |
aatatcaacttcagcaatgatggaaacaggcaagggaatggaggcaatttttttcctaaggtagtgaagaatgagttctgcatcagtagggtggaaccta |
32967157 |
T |
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| Q |
394 |
aaacctggtggcaaattgg |
412 |
Q |
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| T |
32967156 |
aaacctggtggcaaattgg |
32967138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 33727921 - 33727818
Alignment:
| Q |
30 |
ccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccattctttctcac |
129 |
Q |
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| T |
33727921 |
ccagttgctttccaatacccagatccagctactctatttggccttgtcccatttggatacttcctatctcttggactaaagaaataccattctttctccc |
33727822 |
T |
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| Q |
130 |
caaa |
133 |
Q |
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| T |
33727821 |
caaa |
33727818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 35772824 - 35772720
Alignment:
| Q |
19 |
gcttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtacca |
118 |
Q |
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|||||||||| ||||| |||||||||||||| |||| || ||||| || ||||| || || |||||||| |||||||| || || || ||||| ||||| |
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| T |
35772824 |
gcttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaaatacca |
35772725 |
T |
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| Q |
119 |
ttctt |
123 |
Q |
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||||| |
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| T |
35772724 |
ttctt |
35772720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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