View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-18 (Length: 66)
Name: NF3096-Insertion-18
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-18 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 41325606 - 41325665
Alignment:
| Q |
7 |
agtaactaactaactaaaacaaaacacaaccagaataatagtatgtctctagtatttcaa |
66 |
Q |
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| T |
41325606 |
agtaactaactaactaaaacaaaacacaaccagaataatagtatgtctctagtatttcaa |
41325665 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 47248131 - 47248074
Alignment:
| Q |
9 |
taactaactaactaaaacaaaacacaaccagaataatagtatgtctctagtatttcaa |
66 |
Q |
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| T |
47248131 |
taactaactaactaaaacaaaacacaatcagaaaaatagtatgtctctagtatttcaa |
47248074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 20906484 - 20906543
Alignment:
| Q |
7 |
agtaactaactaactaaaacaaaacacaaccagaataatagtatgtctctagtatttcaa |
66 |
Q |
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| T |
20906484 |
agtaactaactaactaaaacaaaacacaatcagaagaatagtatgtctctagtatttcaa |
20906543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 42311288 - 42311342
Alignment:
| Q |
9 |
taactaactaactaaaacaaaacacaaccagaataatagtatgtctctagtattt |
63 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42311288 |
taactaactaactaaaacaaaacacaatcagaataatagtatgtctctagtattt |
42311342 |
T |
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