View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3096-Insertion-2 (Length: 1140)

Name: NF3096-Insertion-2
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3096-Insertion-2
NF3096-Insertion-2
[»] chr5 (16 HSPs)
chr5 (8-687)||(42629184-42629866)
chr5 (693-967)||(42630441-42630710)
chr5 (319-687)||(9575310-9575678)
chr5 (35-128)||(3761208-3761301)
chr5 (36-128)||(2756515-2756606)
chr5 (454-519)||(40549277-40549342)
chr5 (330-518)||(41859542-41859730)
chr5 (460-519)||(31789522-31789581)
chr5 (460-523)||(42637359-42637422)
chr5 (458-519)||(40545117-40545178)
chr5 (319-515)||(15807587-15807783)
chr5 (79-128)||(3678491-3678540)
chr5 (702-791)||(42638131-42638220)
chr5 (460-512)||(32032878-32032930)
chr5 (462-523)||(37512893-37512954)
chr5 (730-791)||(42782321-42782382)
[»] chr7 (5 HSPs)
chr7 (240-677)||(45866702-45867133)
chr7 (60-128)||(19883586-19883654)
chr7 (727-856)||(45865938-45866067)
chr7 (11-104)||(48888002-48888095)
chr7 (76-128)||(6232005-6232057)
[»] chr4 (5 HSPs)
chr4 (11-112)||(18847868-18847969)
chr4 (35-107)||(42111221-42111293)
chr4 (79-128)||(55328948-55328997)
chr4 (418-566)||(9581951-9582099)
chr4 (418-566)||(9587646-9587794)
[»] chr8 (3 HSPs)
chr8 (449-678)||(3367849-3368084)
chr8 (702-865)||(3368646-3368809)
chr8 (11-128)||(42202487-42202604)
[»] chr1 (3 HSPs)
chr1 (35-128)||(13154805-13154898)
chr1 (707-862)||(34287541-34287696)
chr1 (454-523)||(368799-368868)
[»] chr3 (2 HSPs)
chr3 (24-128)||(51361066-51361174)
chr3 (460-516)||(5162455-5162511)
[»] chr6 (7 HSPs)
chr6 (454-518)||(32960738-32960802)
chr6 (710-774)||(32745702-32745766)
chr6 (730-791)||(21379306-21379367)
chr6 (710-783)||(23216815-23216888)
chr6 (76-128)||(380919-380971)
chr6 (725-774)||(29012046-29012095)
chr6 (710-791)||(29144421-29144502)
[»] scaffold0134 (1 HSPs)
scaffold0134 (710-774)||(17097-17161)
[»] scaffold0691 (1 HSPs)
scaffold0691 (35-107)||(997-1069)
[»] chr2 (2 HSPs)
chr2 (76-128)||(38970846-38970898)
chr2 (454-523)||(44937800-44937869)
[»] scaffold0129 (1 HSPs)
scaffold0129 (460-518)||(10484-10542)


Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 42629184 - 42629866
Alignment:
Q  8 tcactttccaaatgtgccataataccacatgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttg 107  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  42629184 tcactttccaaatgt-ccataataccgcatgccaaatcatccaatatcctttacaaagctttttcttcccggtctccccactccaacattcaaaatgttg 42629282  T
Q  108 aaacagagatcgaggtgtaatnnnnnnnnnnnnnnnnnnnnnncttgtatatattgcattgttatacatgctaagcaataccttttttatttattaaaaa 207  Q
    |||||||||||||||||||||                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42629283 aaacagagatcgaggtgtaataaaattaaacaataaaacaaaatttgtatatattgcattgttatacatgctaagcaataccttttttatttattaaaaa 42629382  T
Q  208 tcataataaccaaaggcatgta----cctcttgtgtgaaaaaacactaattgttaattctttcaattggtagaaggctttcctcataaactattatttgg 303  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42629383 tcataataaccaaaggcatgtatgtacctcttgtgtgaaaaaacactaagtgttaattctttcaattggtagaaggctttcctcataaactattatttgg 42629482  T
Q  304 cagctctcgcctgtttcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccnnnnnnnncaagaatatat 403  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||    
T  42629483 cagctctggcctgtttcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccttttttttcaagtatatat 42629582  T
Q  404 caccatttttaccaactccaataggatgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaat 503  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  42629583 caccatttttaccaactccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaat 42629682  T
Q  504 tgatatatgaaaagttgttgactctacataatttgaaattaatccaattgaaccatttaacacatttaagtgtctaaacacttgtctagaatcaatatca 603  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42629683 tgatatatgaaaagttgttgactctacataatttaaaattaatccaattgaaccatttaacacatttaagtgtctaaacacttgtctagaatcaatatca 42629782  T
Q  604 ttcatgttcaaaggtatgaaggttttcacaaatacctcactgtataagtcaaatgacaccaaataaacttcatcagatgtttca 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42629783 ttcatgttcaaaggtatgaaggttttcacaaatacctcactgtataagtcaaatgacaccaaataaacttcatcagatgtttca 42629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 693 - 967
Target Start/End: Original strand, 42630441 - 42630710
Alignment:
Q  693 tgcaataaggattcttggataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc- 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  42630441 tgcaataaggattcttggataagaaattctttcgaaacatgttcatgaaataagaatttttaaacaaaagagaccatgatttacgcacacaaccaaatcg 42630540  T
Q  792 aaacaaagatttaagagggaagttttgacaaaataaccaaagcaacatcttcatatacgtgatcactaaccttttctttcgttgctaccattaattcctc 891  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42630541 aaacaaagatttaaga-ggaagttttgacaaaataaccaacgcaacatcttcatatacgtgatcactaaccttttctttcgttgctaccattaattcc-c 42630638  T
Q  892 ccatctctaaactccagtggagagaggaggccgctgaagacaaacaaaccgtcaacaattgtttgaattcttttac 967  Q
    |||||||||||||||||| ||||   || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42630639 ccatctctaaactccagt-gaga---gaagccgctgaagacaaacaaactgtcaacaattgtttgaattcttttac 42630710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 319 - 687
Target Start/End: Original strand, 9575310 - 9575678
Alignment:
Q  319 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccnnnnnnnncaagaatatatcaccatttttaccaa 418  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||| | | ||| ||  ||||||         |||||||| ||||| ||||||||||    
T  9575310 tcacctttaacaccaagctctacaattttctgggtgattaaattaaacctagctaattgattatccttttttctaaagaatatgtcaccctttttaccaa 9575409  T
Q  419 ctccaataggatgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagt 518  Q
    |||| |||||||||| |||| ||  |||| || | || || ||||||||| ||||||||||||||| ||| |||| |||||||| |||||| || ||| |    
T  9575410 ctcctataggatgcttaacatagaacaacggatctacgatgaagagtttggtccatgactccttcattccaactttatccaaaactgatatgtgtaaaat 9575509  T
Q  519 tgttgactctacataatttgaaattaatccaattgaaccatttaacacatttaagtgtctaaacacttgtctagaatcaatatcattcatgttcaaaggt 618  Q
     ||||   || |||||||| ||||  |||||||| | ||||| | |||| | ||||||||||| ||  |||||||||||||| ||| |||| |  |||||    
T  9575510 agttgttccttcataatttaaaatccatccaattaatccattgagcacactcaagtgtctaaaaacaggtctagaatcaataccatccatgcttgaaggt 9575609  T
Q  619 atgaaggttttcacaaatacctcactgtataagtcaaatgacaccaaataaacttcatcagatgtttca 687  Q
    ||| | |||||||||||||||||| ||  ||||| |||||| |||| |||||||||||||  |||||||    
T  9575610 atggacgttttcacaaatacctcattgcttaagttaaatgataccagataaacttcatcatgtgtttca 9575678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 3761208 - 3761301
Alignment:
Q  35 catgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    ||||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  3761208 catgccaaaccatccaatagcctttgcaaagccttttcttcccaatctccccactccaacattcaaaatgttgaaacaaagattgaggtgtaat 3761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 2756515 - 2756606
Alignment:
Q  36 atgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    |||||||| ||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2756515 atgccaaaccatccaatttcctttacaaagttttttcttcccaatctccccactccaacattcaaaatgttgaaac-gagattgaggtgtaat 2756606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 40549342 - 40549277
Alignment:
Q  454 acaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagtt 519  Q
    |||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||| ||||    
T  40549342 acaacaaagagtttgatccatgattccttcacaccgacttcacccaaaattgatatgtgaatagtt 40549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 518
Target Start/End: Original strand, 41859542 - 41859730
Alignment:
Q  330 accaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccnnnnnnnncaagaatatatcaccatttttaccaactccaatagga 429  Q
    |||||| ||||||||| | |||||| ||||||||||  |||||||||  ||||||         || || ||||| || || ||||||||||||||||||    
T  41859542 accaaggtcttcaattctctgggtgcttaaattaaacaaaactagttcattatcctttttccggaaaaacatatctcctttcttaccaactccaatagga 41859641  T
Q  430 tgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagt 518  Q
     ||| ||||  || |||| |||| ||||  |||||||||||||||||||| || |  || |||||| | |||| |||||||||||||||    
T  41859642 cgcttaacatcggacaacggacctacaacgaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaaagt 41859730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 31789581 - 31789522
Alignment:
Q  460 aagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagtt 519  Q
    ||||||||||||||||| |||||||| || |||||| |||||||||||||||| ||||||    
T  31789581 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatatggaaagtt 31789522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 460 - 523
Target Start/End: Original strand, 42637359 - 42637422
Alignment:
Q  460 aagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttg 523  Q
    ||||||||| ||||||| |||||||| ||||||||| ||||||||||||| |||||||| ||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttg 42637422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 458 - 519
Target Start/End: Complemental strand, 40545178 - 40545117
Alignment:
Q  458 taaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagtt 519  Q
    |||| |||||||||||||| |||||||| || |||||| ||||||||||||| |||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaagtt 40545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 515
Target Start/End: Original strand, 15807587 - 15807783
Alignment:
Q  319 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccnnnnnnnncaagaatatatcaccatttttaccaa 418  Q
    |||||||| |||||||||||||| ||| | |||||| |||||| ||| |||||||  |  ||||||         ||||||||||| || || |||| ||    
T  15807587 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 15807686  T
Q  419 ctccaataggatgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaa 515  Q
     |||||||||||| ||||  |  | |||  |||| ||||||||||||||| |||||||||| || |  || |||||| ||||||||||||| |||||    
T  15807687 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 15807783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 3678491 - 3678540
Alignment:
Q  79 atctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    ||||||||| ||||||| |||||||||||||||| |||| ||||||||||    
T  3678491 atctccccattccaacactcaaaatgttgaaacatagattgaggtgtaat 3678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 702 - 791
Target Start/End: Original strand, 42638131 - 42638220
Alignment:
Q  702 gattcttggataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc 791  Q
    |||||||  ||||||||||  ||||||||||| || ||||||||| ||| |  || || | |||||| ||||||||||||||||||||||    
T  42638131 gattcttatataagaaatttcttcgaaacatggtcttgaaataaggattatctaacaagaaagaccaagatttacgcacacaaccaaatc 42638220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 32032930 - 32032878
Alignment:
Q  460 aagagtttgatccatgactccttcactccgacttcatccaaaattgatatatg 512  Q
    ||||||||||||||||| |||||||| || |||||| || |||||||||||||    
T  32032930 aagagtttgatccatgattccttcacaccaacttcaccccaaattgatatatg 32032878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 462 - 523
Target Start/End: Complemental strand, 37512954 - 37512893
Alignment:
Q  462 gagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttg 523  Q
    ||||||||||||||| | |||| | || || ||| ||||||||||||| |||||||||||||    
T  37512954 gagtttgatccatgatttcttcccaccaacctcacccaaaattgatatgtgaaaagttgttg 37512893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 730 - 791
Target Start/End: Complemental strand, 42782382 - 42782321
Alignment:
Q  730 catgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc 791  Q
    ||||||||||||| ||| ||||| ||||| ||| |||||||||||||| || || |||||||    
T  42782382 catgttcatgaaaaaaggattttcaaatagaagtgaccatgatttacgtacgcatccaaatc 42782321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 5e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 240 - 677
Target Start/End: Complemental strand, 45867133 - 45866702
Alignment:
Q  240 gaaaaaacactaattgttaattctttcaattggtagaaggctttcctcataaactattatttggcagctctcgcctgtttcacctttgacaccaagctct 339  Q
    |||||||  ||||||||| |||||  |||| |||||||||||||||| |||||||||||| |||||         ||  | |||||| ||||||||||||    
T  45867133 gaaaaaagtctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggcaaag------tgaataacctttaacaccaagctct 45867040  T
Q  340 tcaattttttgggtgattaaattaaaacaaactagtttgttatccnnnnnnnncaagaatatatcaccatttttaccaactccaataggatgctcaacac 439  Q
    |||||||| || ||| ||||||||||  |||||||||  | |||          ||||||||||||||  | ||||||| || ||||||||| || ||||    
T  45867039 tcaattttctgtgtgcttaaattaaatgaaactagttcatcatcttcttttctaaagaatatatcacccgtcttaccaattctaataggatggtcgacac 45866940  T
Q  440 aggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttgactctacataatttga 539  Q
    | | |||   |||||||||||| |||||||||||||||||||||||||| | |||| | ||||||||||| |||||| |    |  | |||||||||| |    
T  45866939 aagacaaagaacccacaataaaaagtttgatccatgactccttcactccaatttcacctaaaattgatatgtgaaaaataccggtatttacataatttaa 45866840  T
Q  540 aattaatccaattgaaccatttaacacatttaagtgtctaaacacttgtctagaatcaatatcattcatgttcaaaggtatgaaggttttcacaaatacc 639  Q
    |||  || ||||||| |||||||||||||||||||||||||||||   ||||||||||||||||| |||  |  ||||||| || |||||||||||||||    
T  45866839 aatacattcaattgatccatttaacacatttaagtgtctaaacacaactctagaatcaatatcatccatagttgaaggtatcaatgttttcacaaatacc 45866740  T
Q  640 tcactgtataagtcaaatgacaccaaataaacttcatc 677  Q
    ||| ||   ||||||||||| |||||||||||||||||    
T  45866739 tcattgctcaagtcaaatgaaaccaaataaacttcatc 45866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 19883586 - 19883654
Alignment:
Q  60 acaaagctttttctttccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19883586 acaaagttttttcttcccaatctccccactccaacattcaaaatgttgaaacagagattgaggtgtaat 19883654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 727 - 856
Target Start/End: Complemental strand, 45866067 - 45865938
Alignment:
Q  727 aaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc-aaacaaagatttaagagggaagttttgacaaaat 825  Q
    |||||||| |||||||||||| ||||  ||||||||||||| |||||||||  ||||||  |||| || ||||||||| ||||| || |||||| | |||    
T  45866067 aaacatgtccatgaaataagagttttcgaataaaagagaccgtgatttacgtgcacaacggaatctaatcaaagatttgagaggcaa-ttttgagagaat 45865969  T
Q  826 aaccaaagcaacatcttcatatacgtgatca 856  Q
    |||||| |||||||| ||||||| |||||||    
T  45865968 aaccaaggcaacatcatcatatatgtgatca 45865938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 48888095 - 48888002
Alignment:
Q  11 ctttccaaatgtgccataataccacatgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatg 104  Q
    ||||||||||   |||||| ||||||||||||||||| ||||| ||||| | |||||||  | | |||||||||||| ||||||| ||||||||    
T  48888095 ctttccaaatcgtccataagaccacatgccaaatcatccaataccctttgcgaagctttcgcctcccaatctccccattccaacactcaaaatg 48888002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 6232057 - 6232005
Alignment:
Q  76 ccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    |||||||||||| ||||||| |||||||||||||| || ||| ||||||||||    
T  6232057 ccaatctccccattccaacactcaaaatgttgaaaaagggattgaggtgtaat 6232005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 6e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 18847969 - 18847868
Alignment:
Q  11 ctttccaaatgtgccataataccacatgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttgaaa 110  Q
    ||||||||||   |||||||||| ||||||||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18847969 ctttccaaatcgtccataataccgcatgccaaatcaaccaataccctttacaaagctttttcttcccaatctccccactccaacattcaaaatgttgaaa 18847870  T
Q  111 ca 112  Q
    ||    
T  18847869 ca 18847868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 42111221 - 42111293
Alignment:
Q  35 catgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttg 107  Q
    ||||||||||||| ||||| ||||||| |||||||    | |||||||||||||||||||| |||||||||||    
T  42111221 catgccaaatcatccaataacctttacgaagctttagtctcccaatctccccactccaacactcaaaatgttg 42111293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 55328997 - 55328948
Alignment:
Q  79 atctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    ||||||||| ||||||| |||||||||||||| |||||| ||||||||||    
T  55328997 atctccccattccaacactcaaaatgttgaaaaagagattgaggtgtaat 55328948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 418 - 566
Target Start/End: Original strand, 9581951 - 9582099
Alignment:
Q  418 actccaataggatgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaag 517  Q
    |||||||||||| ||||||  || | |||| | || || || ||||||||| ||||||||||||| |  |||  |||| ||||||||||||| ||||||     
T  9581951 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9582050  T
Q  518 ttgttgactctacataatttgaaattaatccaattgaaccatttaacac 566  Q
    |||| | |||| ||| || ||| || ||| |||| || |||||||||||    
T  9582051 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacac 9582099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 418 - 566
Target Start/End: Original strand, 9587646 - 9587794
Alignment:
Q  418 actccaataggatgctcaacacaggtcaacagacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaag 517  Q
    |||||||||||| ||||||  || | |||| | || || || ||||||||| ||||||||||||| |  |||  |||| ||||||||||||| ||||||     
T  9587646 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9587745  T
Q  518 ttgttgactctacataatttgaaattaatccaattgaaccatttaacac 566  Q
    |||| | |||| ||| || ||| || ||| |||| || |||||||||||    
T  9587746 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacac 9587794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 449 - 678
Target Start/End: Original strand, 3367849 - 3368084
Alignment:
Q  449 gacccacaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttgactctacataatttgaaattaatcc 548  Q
    |||| ||||||||||||||| |||||||||| || || || |||||| | ||||||||||| || |||||    | |||| |||||||||||||  || |    
T  3367849 gacctacaataaagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtggaaagtaccagtctctgcataatttgaaatccatac 3367948  T
Q  549 aattgaaccatttaacacatttaagtgtctaaacacttgtctagaatcaatatcatt------catgttcaaaggtatgaaggttttcacaaatacctca 642  Q
    |||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||||      ||| ||  ||||||||   ||||||||||| ||||||    
T  3367949 aattgatccatttaacacattcaagtgtctaaacaatattctagaatcaatatcattatcatccatatttgaaggtatgggtgttttcacaaagacctca 3368048  T
Q  643 ctgtataagtcaaatgacaccaaataaacttcatca 678  Q
     ||   || |||||||||||||||||||||||||||    
T  3368049 ttgatcaattcaaatgacaccaaataaacttcatca 3368084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 702 - 865
Target Start/End: Original strand, 3368646 - 3368809
Alignment:
Q  702 gattcttggataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc-aaacaaaga 800  Q
    ||||||| ||||| ||| |  |||| ||||||| |||||||||||  |||| |||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  3368646 gattcttagataaaaaaattcttcggaacatgtccatgaaataagggttttcaaataagagagaccatgatttacgcacacaacgaaatcgaaacaaaga 3368745  T
Q  801 tttaagagggaagttttgacaaaataaccaaagcaacatcttcatatacgtgatcactaaccttt 865  Q
    ||| ||||| || ||| |||| ||| || || ||||| || ||||||| |||||  |||||||||    
T  3368746 tttgagaggtaa-tttagacagaatgacgaaggcaacgtcatcatatatgtgattgctaaccttt 3368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 42202604 - 42202487
Alignment:
Q  11 ctttccaaatgtgccataataccacatgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttgaaa 110  Q
    ||||||||||   |||||| ||| ||||||| ||||  ||||| ||||||| ||| ||  || | ||||| |||||| ||||||||||||||||||||||    
T  42202604 ctttccaaatcgaccataaaaccgcatgccatatcaaccaataacctttacgaagtttcctcctcccaatttccccattccaacattcaaaatgttgaaa 42202505  T
Q  111 cagagatcgaggtgtaat 128  Q
     |||||| | ||||||||    
T  42202504 aagagattgcggtgtaat 42202487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 13154898 - 13154805
Alignment:
Q  35 catgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    ||||||||| ||| ||||| ||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||| |||||    
T  13154898 catgccaaaccatccaatagcctttgcaaagccttttcttcccaatctccccgctccaacattcaaaatgttgaaacaaagattgaggagtaat 13154805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 707 - 862
Target Start/End: Complemental strand, 34287696 - 34287541
Alignment:
Q  707 ttggataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc-aaacaaagatttaa 805  Q
    ||||||||||||||  ||||||| ||||||||||||||||  |||| ||| ||  ||||||||||||| || |  |||| ||||| ||| | |||||| |    
T  34287696 ttggataagaaatttcttcgaaagatgttcatgaaataagggttttcaaacaatggagaccatgatttgcgtatgcaacaaaatcgaaagatagatttga 34287597  T
Q  806 gagggaagttttgacaaaataaccaaagcaacatcttcatatacgtgatcactaacc 862  Q
    |||| || |||||| | |||||||||||||||||| ||| ||| |||||| ||||||    
T  34287596 gaggtaa-ttttgagagaataaccaaagcaacatcatcacatatgtgatcgctaacc 34287541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 523
Target Start/End: Complemental strand, 368868 - 368799
Alignment:
Q  454 acaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttg 523  Q
    ||||| ||||||||||||||||| |||||||| || | |||| | | ||||||||| |||||||| ||||    
T  368868 acaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagttg 368799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 51361174 - 51361066
Alignment:
Q  24 ccataataccacatgccaaatcattcaatatccttta----caaagctttttctttccaatctccccactccaacattcaaaatgttgaaacagagatcg 119  Q
    |||||||||| |||||||| |||  ||||| ||||||    ||||||||||||||||| |||||||||||||||||||| ||||||| ||||| || | |    
T  51361174 ccataataccgcatgccaagtcaaccaataccctttaattacaaagctttttctttcccatctccccactccaacattcgaaatgttaaaacaaagtttg 51361075  T
Q  120 aggtgtaat 128  Q
    |||||||||    
T  51361074 aggtgtaat 51361066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 5162511 - 5162455
Alignment:
Q  460 aagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaa 516  Q
    ||||||||||||||||| |||||||| || |||||| ||||||||||||| ||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 32960738 - 32960802
Alignment:
Q  454 acaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagt 518  Q
    |||||||||||||||||||| || |||||||  |||| ||||||||||||||||| |||||||||    
T  32960738 acaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagt 32960802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 710 - 774
Target Start/End: Original strand, 32745702 - 32745766
Alignment:
Q  710 gataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgattt 774  Q
    ||||||||||| || ||||||||||||||||||| || ||||| | |||| ||||||||||||||    
T  32745702 gataagaaattgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgattt 32745766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 730 - 791
Target Start/End: Original strand, 21379306 - 21379367
Alignment:
Q  730 catgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc 791  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||| || || |||||||    
T  21379306 catgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatc 21379367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 710 - 783
Target Start/End: Original strand, 23216815 - 23216888
Alignment:
Q  710 gataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacaca 783  Q
    |||||||| || || ||||||||||||||||||| |||||| | || ||| |||||||||||||| || |||||    
T  23216815 gataagaagttattgcgaaacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacaca 23216888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 380919 - 380971
Alignment:
Q  76 ccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    |||||||||||| ||||||| |||||||||||||| || ||| ||||||||||    
T  380919 ccaatctccccattccaacactcaaaatgttgaaaaagggattgaggtgtaat 380971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 725 - 774
Target Start/End: Complemental strand, 29012095 - 29012046
Alignment:
Q  725 cgaaacatgttcatgaaataagaatttttaaataaaagagaccatgattt 774  Q
    ||||||||||||||||||| || ||||| ||| || ||||||||||||||    
T  29012095 cgaaacatgttcatgaaatgagtattttcaaacaagagagaccatgattt 29012046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 710 - 791
Target Start/End: Complemental strand, 29144502 - 29144421
Alignment:
Q  710 gataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgatttacgcacacaaccaaatc 791  Q
    ||||||||||| || || |||||||||||||||| || || || |||||| ||| |||| |||||||| || || |||||||    
T  29144502 gataagaaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatc 29144421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 710 - 774
Target Start/End: Original strand, 17097 - 17161
Alignment:
Q  710 gataagaaattctttcgaaacatgttcatgaaataagaatttttaaataaaagagaccatgattt 774  Q
    ||||||||||| || |||||| ||||||||||||||||||| | || ||| ||||||||||||||    
T  17097 gataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatgattt 17161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 1069 - 997
Alignment:
Q  35 catgccaaatcattcaatatcctttacaaagctttttctttccaatctccccactccaacattcaaaatgttg 107  Q
    ||||||||||||| ||||| |||||||  ||||||    | |||||||||||||||||||| |||||||||||    
T  1069 catgccaaatcatccaataacctttacggagctttagtctcccaatctccccactccaacactcaaaatgttg 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 38970898 - 38970846
Alignment:
Q  76 ccaatctccccactccaacattcaaaatgttgaaacagagatcgaggtgtaat 128  Q
    |||||||||||| ||||||| |||||||| ||||| |||||| ||||||||||    
T  38970898 ccaatctccccattccaacactcaaaatgatgaaatagagattgaggtgtaat 38970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 44937800 - 44937869
Alignment:
Q  454 acaataaagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagttgttg 523  Q
    |||| |||||||||  ||||||| || ||||| |||| |||| ||||||||||||| |||||||| ||||    
T  44937800 acaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagttg 44937869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 460 - 518
Target Start/End: Complemental strand, 10542 - 10484
Alignment:
Q  460 aagagtttgatccatgactccttcactccgacttcatccaaaattgatatatgaaaagt 518  Q
    ||||||||  |||| ||||||||||| || |||||| ||||||||||||| ||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaagt 10484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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