View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-4 (Length: 859)
Name: NF3096-Insertion-4
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 8 - 603
Target Start/End: Complemental strand, 7380639 - 7380043
Alignment:
| Q |
8 |
gtacatacgaaagaaaataaaaagt-aaggtatagcttcatgtaatcatatgaaatatctagtcacaaatgcaattaaatcatatgaaatatctagttag |
106 |
Q |
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| T |
7380639 |
gtacatacgaaagaaaataaaaagttaaggtatagcttcatgtaatcatatgaaatatctagttacaaatgcaattaaatcatatgaaatatctagttag |
7380540 |
T |
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| Q |
107 |
aaatgcaattacaaatgcacatgtccattactccatgggatcttgccaccatacacatattgtcatgtaatgtccatcactatatatgtcacacatggca |
206 |
Q |
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| T |
7380539 |
aaatgcaattacaaatgcacatgtccattactccatgggatcttgccaccatacacatattgtcatgtaatgtccatcactatatatgtcacacatggca |
7380440 |
T |
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| Q |
207 |
tggttcttaacgactttgacttggacccaacacnnnnnnngttcctatctataagaaaggaatggaatagatagtggaagatatcatatcaattatataa |
306 |
Q |
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| T |
7380439 |
tggttcttaacgactttgacttggacccaacactttttttgttcctatctataagaaaggaatggaatagatagtggaagatatcatatcaattatataa |
7380340 |
T |
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| Q |
307 |
cattatttgatacaggatcatgagtgaccctacttcattaattctatggtgtcctacatagcaggtgtggtgtgcaatcataaatcataatattatcgaa |
406 |
Q |
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| T |
7380339 |
cattatttgatacaggatcatgagtgaccctacttcattaattctatggtgtcctacatagcaggtgtggtgtgcaatcataaatcataatattatcgaa |
7380240 |
T |
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| Q |
407 |
agtgggcagttctttctcctttttgacctttatgtgttttttctttcacgtgtaaagggatattcatttgaaatggttactctactccgactttattttt |
506 |
Q |
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| T |
7380239 |
agtgggcagttctttctcctttttgacctttatgtgttttttctttcacgtgtaaagggatattcatttgaaatggttactctactccgactttattttt |
7380140 |
T |
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| Q |
507 |
ggtttcatacaaattttctacgtatccggatcctttccttcacattacaaagggagtgatgagaaaaaataggaaattgaagggtacaaaagagaag |
603 |
Q |
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| T |
7380139 |
ggtttcatacatgttttctacgtatccagatcctttccttcacattacaaagggagtgatgagaaaaaataggaaattgaagggtacaaaagagaag |
7380043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 7379920 - 7379845
Alignment:
| Q |
525 |
tacgtatccggatcctttccttcacattacaaagggagtgatgagaaaaaataggaaattgaagggtacaaaagaga |
601 |
Q |
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| T |
7379920 |
tacgtatccgaatcctctccttcacattacaaagggag-gatgagagagaataagaaattaaaaggtaataaagaga |
7379845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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