View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096-Insertion-8 (Length: 775)
Name: NF3096-Insertion-8
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 4633047 - 4633446
Alignment:
| Q |
7 |
actttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggtatataccatcgtcaatttgctagctta----taagttatct |
102 |
Q |
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| T |
4633047 |
actttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggtatataccatcgtcaatttgctagcttaattataagttatct |
4633146 |
T |
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| Q |
103 |
gttatatatttttaacagcagagtttaaatgttgttaatatattacaattgcagctgaatcattgggaattccaatggtgaaaccatatttaggaattaa |
202 |
Q |
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| T |
4633147 |
gttatatatttttaacagcagagtttaaatgttgttaatatattacaattgcagctgagtcattgggaattccaatggtgaaaccatatttaggaattaa |
4633246 |
T |
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| Q |
203 |
gaatggtgtattggaagataatagtgcaaaggaaggagcaaattttgctgttataggagcaacagcgttggacgttagtttctttgaagagaggggtgtt |
302 |
Q |
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| T |
4633247 |
gaatggtgtattggaagataatagtgcaaaggaaggagcaaattttgctgttataggagcaacggcgttggacgttagtttctttgaagagaggggtgtt |
4633346 |
T |
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| Q |
303 |
ggttttagtaccaattattctttgacagttcaattgaattggttcaaggaacttctcccttctctttgcaattcctccaaaagtaagttctcaaatattc |
402 |
Q |
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| T |
4633347 |
ggttttagtaccaattattctttgacagttcaattgaattggttcaaggaacttctcccttctctttgcaattcctccaaaagtaagttctcaaatattc |
4633446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 489 - 736
Target Start/End: Original strand, 4633557 - 4633798
Alignment:
| Q |
489 |
atagttaaattggtaatttactcatcatctctacccaccggcaccgcacatcatacagaccctaccccgattattaaattttatttttgtcttcttgtct |
588 |
Q |
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| T |
4633557 |
atagttaaattggtaatttactcatcatctctacccaccggcaccgcacatcatacagaccctacc--gattattaaattttatttttgtcttcttgtct |
4633654 |
T |
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| Q |
589 |
acacctgttatggtgataagtttagtattttttatttattttagtaaaaagtccatggaaagcacgtgtatataaataaaaggaaatgataacgagcgtt |
688 |
Q |
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| T |
4633655 |
acacctgttatggtgataagcttagtattttttatttattttacggaaaagtccatggaaagcacgtgtatataaataaaaggaaatgctaa----cgtt |
4633750 |
T |
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| Q |
689 |
taagtacatttttaaagaaatttagaagagaaagtttagtttagactc |
736 |
Q |
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| T |
4633751 |
taagtacatttgtaaagaaattttaaagagaaagtttattttagactc |
4633798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 151 - 395
Target Start/End: Original strand, 4654432 - 4654679
Alignment:
| Q |
151 |
ttgcagctgaatcattgggaattccaatggtgaaaccatatttaggaattaagaatggtgtattggaagataatagtgcaaaggaaggagcaaattttgc |
250 |
Q |
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| T |
4654432 |
ttgcagctgaggcattgggaattcaaatggtgaaaccatatttaggaattaagaatggtgtattgaaagatatgagtgtaaaggagggagtgaattttgc |
4654531 |
T |
|
| Q |
251 |
tgttataggagcaacagcgttggacgttagtttctttgaagagaggggtgtt---ggttttagtaccaattattctttgacagttcaattgaattggttc |
347 |
Q |
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| T |
4654532 |
tgttatgggagcaaccgcgttggacattagtttctttgaagaaaggggtgttcacagtgttaccaccaattattctttcggggttcagttgaattggttc |
4654631 |
T |
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| Q |
348 |
aaggaacttctcccttctctttgcaattcctccaaaagtaagttctca |
395 |
Q |
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| T |
4654632 |
aaggaactactccctcatatctgcaattcttccaaaagtaagttctca |
4654679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 4654292 - 4654351
Alignment:
| Q |
7 |
actttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggta |
66 |
Q |
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| T |
4654292 |
actttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggta |
4654351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 4633479 - 4633525
Alignment:
| Q |
444 |
tgagtagtaaatcaatcgtagaggtttgaccattttcaaatttcaat |
490 |
Q |
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| T |
4633479 |
tgagtagtaaatcaatcgtaaaggtttgaccattttcaaatttcaat |
4633525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 4642038 - 4642097
Alignment:
| Q |
9 |
tttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttcatcggtata |
68 |
Q |
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| T |
4642038 |
tttcatcatcccaatggacgctgctctgatggccgcctcatcgttgatttcatcggtata |
4642097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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