View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096R-Insertion-1 (Length: 108)
Name: NF3096R-Insertion-1
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 32747878 - 32747783
Alignment:
| Q |
9 |
caatcaagtgcctacagtggcatgtgttacgtaagtaacttattttctccaactgcaagaatgcagagtagcctccttgtcttggctcttgttaat |
104 |
Q |
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| T |
32747878 |
caatcaagtgcctacagtggcatgtgttacgtaagtaacttattttctccaactgcaagaatgcagagtagcctccttgtcttggctcttgttaat |
32747783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 32722550 - 32722455
Alignment:
| Q |
9 |
caatcaagtgcctacagtggcatgtgttacgtaagtaacttattttctccaactgcaagaatgcagagtagcctccttgtcttggctcttgttaat |
104 |
Q |
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| T |
32722550 |
caatcatgtgcctgcagtgacatgtgttacgtacgtaacttattttctccaactgcaagaatgcagagtagcctccttttcttggctcttgttaat |
32722455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 32731005 - 32730910
Alignment:
| Q |
9 |
caatcaagtgcctacagtggcatgtgttacgtaagtaacttattttctccaactgcaagaatgcagagtagcctccttgtcttggctcttgttaat |
104 |
Q |
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| T |
32731005 |
caatcatgtgcctgcagtgacatgtgttacgtacgtaacttattttctccaactgcaagaatgcagagtagcctccttttcttggctcttgttaat |
32730910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 3282572 - 3282625
Alignment:
| Q |
51 |
ttttctccaactgcaagaatgcagagtagcctccttgtcttggctcttgttaat |
104 |
Q |
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|||||||||||| || ||||||| ||||||||||||| | ||||||||| |||| |
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| T |
3282572 |
ttttctccaactacaggaatgcaaagtagcctccttgccctggctcttgctaat |
3282625 |
T |
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