View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3096R-Insertion-10 (Length: 860)

Name: NF3096R-Insertion-10
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3096R-Insertion-10
NF3096R-Insertion-10
[»] chr5 (21 HSPs)
chr5 (99-786)||(23127583-23128286)
chr5 (341-467)||(23096149-23096275)
chr5 (107-170)||(23095896-23095959)
chr5 (243-301)||(23096070-23096130)
chr5 (367-467)||(23072037-23072137)
chr5 (108-155)||(23071791-23071838)
chr5 (22-85)||(43001859-43001922)
chr5 (591-687)||(23096371-23096467)
chr5 (19-87)||(27932286-27932354)
chr5 (8-87)||(43564921-43565000)
chr5 (45-87)||(38464313-38464355)
chr5 (22-87)||(30098391-30098456)
chr5 (52-88)||(2548464-2548500)
chr5 (52-88)||(14674333-14674369)
chr5 (52-83)||(16252690-16252721)
chr5 (8-87)||(21576685-21576764)
chr5 (243-301)||(23071906-23071967)
chr5 (45-88)||(35252257-35252300)
chr5 (49-87)||(11596398-11596436)
chr5 (8-82)||(26312809-26312883)
chr5 (8-85)||(21190998-21191075)
[»] chr1 (7 HSPs)
chr1 (335-467)||(6963549-6963681)
chr1 (8-88)||(38078600-38078680)
chr1 (22-85)||(1486646-1486709)
chr1 (8-87)||(37598871-37598950)
chr1 (45-87)||(7918154-7918196)
chr1 (45-87)||(22947807-22947849)
chr1 (8-85)||(42359391-42359468)
[»] chr8 (10 HSPs)
chr8 (22-87)||(16641909-16641974)
chr8 (8-87)||(36450694-36450773)
chr8 (15-87)||(29510233-29510305)
chr8 (16-87)||(22652035-22652106)
chr8 (45-87)||(7616768-7616810)
chr8 (45-87)||(34127172-34127214)
chr8 (45-87)||(38487157-38487199)
chr8 (22-87)||(8343381-8343446)
chr8 (51-88)||(25566913-25566950)
chr8 (21-86)||(29447040-29447105)
[»] chr6 (7 HSPs)
chr6 (8-88)||(34595174-34595254)
chr6 (16-87)||(10294166-10294237)
chr6 (22-85)||(12696383-12696446)
chr6 (8-87)||(28152138-28152217)
chr6 (8-87)||(28715335-28715414)
chr6 (22-87)||(17327590-17327655)
chr6 (45-86)||(31959227-31959268)
[»] chr4 (9 HSPs)
chr4 (8-87)||(23292926-23293005)
chr4 (17-86)||(848011-848080)
chr4 (22-86)||(3947702-3947766)
chr4 (8-72)||(49431066-49431130)
chr4 (8-87)||(12895214-12895293)
chr4 (7-85)||(4157188-4157266)
chr4 (45-87)||(17876243-17876285)
chr4 (45-87)||(40784030-40784072)
chr4 (45-87)||(53381530-53381572)
[»] scaffold0652 (1 HSPs)
scaffold0652 (8-86)||(403-481)
[»] chr2 (9 HSPs)
chr2 (8-86)||(28596509-28596587)
chr2 (8-87)||(18840953-18841032)
chr2 (8-87)||(38117099-38117178)
chr2 (8-85)||(2438661-2438738)
chr2 (8-87)||(15972913-15972992)
chr2 (9-87)||(19580225-19580303)
chr2 (21-87)||(27084322-27084388)
chr2 (16-86)||(44860379-44860449)
chr2 (51-88)||(12668351-12668388)
[»] scaffold0004 (1 HSPs)
scaffold0004 (21-86)||(92875-92940)
[»] scaffold0003 (2 HSPs)
scaffold0003 (16-88)||(241653-241725)
scaffold0003 (45-87)||(236914-236956)
[»] chr7 (8 HSPs)
chr7 (11-86)||(32287404-32287479)
chr7 (8-90)||(21880192-21880274)
chr7 (22-87)||(5409771-5409836)
chr7 (8-87)||(598248-598327)
chr7 (45-88)||(3652249-3652292)
chr7 (51-86)||(11272531-11272566)
chr7 (8-87)||(15680849-15680928)
chr7 (8-87)||(21864848-21864927)
[»] chr3 (8 HSPs)
chr3 (8-87)||(55401115-55401194)
chr3 (8-88)||(20503505-20503585)
chr3 (51-87)||(27513598-27513634)
chr3 (8-87)||(7171541-7171620)
chr3 (8-87)||(40993275-40993354)
chr3 (16-86)||(14216951-14217021)
chr3 (16-86)||(14223080-14223150)
chr3 (50-88)||(21861657-21861695)
[»] scaffold0053 (1 HSPs)
scaffold0053 (8-88)||(8838-8918)
[»] scaffold0475 (1 HSPs)
scaffold0475 (8-87)||(3348-3427)


Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 99 - 786
Target Start/End: Original strand, 23127583 - 23128286
Alignment:
Q  99 gtactaactgaaatatcaaactttaaaattgtgacacatttgagctgcatcattgaacagagtcaca------aaccaga-------agtaaaaagtcag 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      |||  ||       ||||||| |||||    
T  23127583 gtactaactgaaacatcaaactttaaaattgtgacacatttgagctgcatcattgaacagagtcacaccaaaaaacttgatatgcaaagtaaaa-gtcag 23127681  T
Q  186 cttaactacggttatttattctatcatctaatttagtgggctactattctagtaaacaaaagaatgaaccaaccatattatatctatcaaaaaacctaat 285  Q
    ||||||||||||||| |  ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23127682 cttaactacggttatatcatctatcatcaaatttagtggggtactattcttgtaaacaaaagaatgaaccaacaatattatatctatcaaaaaacctaat 23127781  T
Q  286 attagcaccatctcaa-gattgagaatcaaaacaaaaaacctaatatgatgattcttcatcatcaaaacacttccttttccctttcctctttgcagatct 384  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23127782 attagcaccatcccaaagattgagaatcaaaacaaaaaacctaatatgatgattcttcatcatcaaaacacttccttttccctttcctcttcgcagatct 23127881  T
Q  385 ctcattctgatttgtatcatgaaccttgtacttttcagcattaacatcacttagacacaatccaggaaaaacattctgcaaaacagtaaaaacaaattag 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23127882 ctcattctgatttgtatcatgaaccttgtacttttcagcattaacatcacttagccacaatccaggaaaaacattctgcaaaacagtaaaaacaaattag 23127981  T
Q  485 gtatttattatcaatgataaattaaacaaaagcagtaatatattgagagattaattattcattaaaaggg-aaacatgcaactaacgtctaactctttct 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23127982 gtatttattatcaatgataaattaaacaaaagcagtaatatattgagagattaattattcattaaaagggaaaacatgcaactaacgtctaactctttct 23128081  T
Q  584 gaacaactctgggcctcttggtgggccttttccgaggccgacaacctgtcaacaccatgaaatcttcatcgatttgcttcctcaagagctgaagagaaaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23128082 gaacaactctgggcctcttggtgggccttttccgaggccgacaacctgtcaacaccatgaaatcttcatcgatttccttcctcaagagctgaagagaaaa 23128181  T
Q  684 tttcggtgtttcaacctcgttactaggaatattacttctcaaccttgacgaaataggatcgacgaaaccatggccaacggcatc-atttc-attctcgac 781  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||    
T  23128182 tttcggtgtttcaacctcgttactaggaatattacttctcaaccttgacgaaataggatcgacgaaaccatggccagcggcgtcaatttcaattctcgac 23128281  T
Q  782 agaga 786  Q
    |||||    
T  23128282 agaga 23128286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 467
Target Start/End: Original strand, 23096149 - 23096275
Alignment:
Q  341 tcatcatcaaaacacttccttttccctttcctctttgcagatctctcattctgatttgtatcatgaaccttgtacttttcagcattaacatcacttagac 440  Q
    |||||||| || || ||||||  ||||||||||||  ||||| || |||||||||||||||| |||||||  ||| ||||  ||||||| || ||||  |    
T  23096149 tcatcatccaaccaattccttaaccctttcctcttcccagatttcccattctgatttgtatcttgaacctcatacatttcttcattaacttctcttaacc 23096248  T
Q  441 acaatccaggaaaaacattctgcaaaa 467  Q
    ||||||||||||||| |||||||||||    
T  23096249 acaatccaggaaaaatattctgcaaaa 23096275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 23095896 - 23095959
Alignment:
Q  107 tgaaatatcaaactttaaaattgtgacacatttgagctgcatcattgaacagagtcacaaacca 170  Q
    ||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  23095896 tgaaacatcaaacttcaaaattgtgacacatttgaaatgcatcattgaacagagtcacacacca 23095959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 23096070 - 23096130
Alignment:
Q  243 aaaagaatgaaccaaccatattatatctatcaaaaaa--cctaatattagcaccatctcaa 301  Q
    |||||||||||| ||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  23096070 aaaagaatgaactaaccatattatatctataaaaaaaaccctaatattagcaccatctcaa 23096130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 23072037 - 23072137
Alignment:
Q  367 tttcctctttgcagatctctcattctgatttgtatcatgaaccttgtacttttcagcattaacatcacttagacacaatccaggaaaaacattctgcaaa 466  Q
    |||||||||  || ||||| |||||||||||||||||||||||| |||| |||||||| |||| || ||||  |||| |||||| ||||| |||| ||||    
T  23072037 tttcctcttcccaaatctcccattctgatttgtatcatgaacctcgtacatttcagcagtaacctctcttaaccacagtccagggaaaaccttctacaaa 23072136  T
Q  467 a 467  Q
    |    
T  23072137 a 23072137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 23071791 - 23071838
Alignment:
Q  108 gaaatatcaaactttaaaattgtgacacatttgagctgcatcattgaa 155  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  23071791 gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaa 23071838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 43001859 - 43001922
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||||||||||||| ||||  ||||||||||||| ||||||||||||||| || |||||||||    
T  43001859 gtgtcggacacgacacgtgtcaaacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 687
Target Start/End: Original strand, 23096371 - 23096467
Alignment:
Q  591 tctgggcctcttggtgggccttttccgaggccgacaacctgtcaacaccatgaaatcttcatcgatttgcttcctcaagagctgaagagaaaatttc 687  Q
    |||||||||||| ||||||||||||||||||| ||  ||  | ||| ||| ||||||||| ||||||| |||| | || ||||||| ||||||||||    
T  23096371 tctgggcctcttagtgggccttttccgaggcccacggcccataaacgccacgaaatcttcctcgatttccttcgttaaaagctgaacagaaaatttc 23096467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 27932286 - 27932354
Alignment:
Q  19 ttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||||||||| |||| | ||||| |||||| |||||| |||||||| | ||||||||||||    
T  27932286 ttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 43564921 - 43565000
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| |||||||||||||||| ||||   || || |||||| ||||||||||| ||| || |||||||||||    
T  43564921 aattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 38464355 - 38464313
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  38464355 acaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 30098391 - 30098456
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||| ||||   ||||| |||||||||||||||||||| | || |||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatag 30098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 2548464 - 2548500
Alignment:
Q  52 gacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2548464 gacacacctaatccgaggagtgtctgtgcttcataga 2548500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 14674333 - 14674369
Alignment:
Q  52 gacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14674333 gacacacctaatccgaggagtgtctgtgcttcataga 14674369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 16252721 - 16252690
Alignment:
Q  52 gacacacctaatccgaggagtatctgtgcttc 83  Q
    ||||||||||||||||||||||||||||||||    
T  16252721 gacacacctaatccgaggagtatctgtgcttc 16252690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 21576764 - 21576685
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| | |||||||||||||| ||||   ||||  |||||| ||||||||||||||| || |||||||||||    
T  21576764 aattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 23071906 - 23071967
Alignment:
Q  243 aaaagaatgaaccaaccatattatatctatcaaaaaa---cctaatattagcaccatctcaa 301  Q
    |||||||||||| |||||||| |||||||| ||||||   ||||||| ||||||||||||||    
T  23071906 aaaagaatgaactaaccatataatatctataaaaaaaaaccctaataatagcaccatctcaa 23071967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 35252300 - 35252257
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||| |||| ||||||||||||||||| |||||||||||||    
T  35252300 acacctgaacacgcctaatccgaggagtatatgtgcttcataga 35252257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 11596436 - 11596398
Alignment:
Q  49 ctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  11596436 ctggacacgcctaatccgaggagtatttgtgcttcatag 11596398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 26312809 - 26312883
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgctt 82  Q
    ||||||| || | |||||||||||||| | ||||   ||||| |||||||||||||||||||||| | |||||||    
T  26312809 aattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtatgtgctt 26312883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 21191075 - 21190998
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||| |||||| |||||||||||| ||| ||||   || || |||||| ||||||||||||||| || |||||||||    
T  21191075 aattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 6963549 - 6963681
Alignment:
Q  335 gattcttcatcatcaaaacacttccttttccctttcctctttgcagatctctcattctgatttgtatcatgaaccttgtacttttcagcattaacatcac 434  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||  ||| ||||||| |||| ||||||  ||| ||||||||||||| || |    
T  6963549 gattcttcatcatcaaaacacttccctttcccgttcctcttcgcagatctcctattttgatttgcatcaagaacctcatacatttcagcattaacctccc 6963648  T
Q  435 ttagacacaatccaggaaaaacattctgcaaaa 467  Q
    |||  ||||||||||| ||||||||||||||||    
T  6963649 ttaaccacaatccagggaaaacattctgcaaaa 6963681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 38078680 - 38078600
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||| |||||| ||||||||||||||||  |||| |||||| |||||| |||||||||||||||||  ||||||||||||    
T  38078680 aattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcataga 38078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 1486709 - 1486646
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||||||||||||| ||||   ||||| |||||| ||||||||||||||| ||||||||||||    
T  1486709 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 37598871 - 37598950
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| |||||||||||||||| ||||   |||   |||||| ||||||||||||||| || |||||||||||    
T  37598871 aattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 7918196 - 7918154
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||||||||||| || |||||||||||    
T  7918196 acaccaggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 22947807 - 22947849
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| ||||||||||||||| || |||||||||||    
T  22947807 acacctggacacgcctaatccgaggagtgtccgtgcttcatag 22947849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 42359468 - 42359391
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||| |||||| ||||||||||| |||  ||||   ||||| |||||| ||||||||||||||| || |||||||||    
T  42359468 aattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 16641974 - 16641909
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||| ||||  |||||| |||||||||||||||||||||| ||||||||||||||    
T  16641974 gtgtcggacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcatag 16641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 36450773 - 36450694
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||  ||||   ||||| |||||| ||||||||||||||| ||||||||||||||    
T  36450773 aattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 29510305 - 29510233
Alignment:
Q  15 agtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||||  ||||   ||||| |||||||||||||||||||||| || |||||||||||    
T  29510305 agtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||| |||||||||||||||| ||||   ||||| ||||||  |||||||||||||| || |||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 7616810 - 7616768
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| |||||||| |||||||| ||||||||||||    
T  7616810 acacctggacacgcctaatcccaggagtatatgtgcttcatag 7616768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 34127214 - 34127172
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||||||||| |||||| || |||||||||||    
T  34127214 acacctggacacacctaatccaaggagtgtccgtgcttcatag 34127172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 38487199 - 38487157
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||    
T  38487199 acacccggacacacataatccgaggagtgtctgtgcttcatag 38487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 8343381 - 8343446
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| ||||||||| ||||   ||||| |||||| |||||||||| |||| ||||||||||||||    
T  8343381 gtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 25566913 - 25566950
Alignment:
Q  51 ggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  25566913 ggacacgcctaatccgaggagtgtctgtgcttcataga 25566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 29447105 - 29447040
Alignment:
Q  21 ggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||||||||||||||| ||||   ||||| |||||| |||||||| |||||| || ||||||||||    
T  29447105 ggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 34595174 - 34595254
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||| |||||| |||||||||||||||| ||||   ||||| |||||||||||||||||||||| || ||||||||||||    
T  34595174 aattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcataga 34595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10294166 - 10294237
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||||||||| ||||   | ||  ||||||| |||||| ||||||| ||||||||||||||    
T  10294166 gtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcatag 10294237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 12696383 - 12696446
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||||||||||||| ||||   ||||| |||||||||| |||| |||||| ||||||||||||    
T  12696383 gtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 28152138 - 28152217
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||| ||||   ||||| |||||  ||||||||||||||| |  |||||||||||    
T  28152138 aattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 28715335 - 28715414
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||| |||||  ||||| |||||| |||||| |||| ||| |  |||||||||||    
T  28715335 aattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 17327655 - 17327590
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||| ||||   ||||  |||||| ||||||||||||||| || |||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 31959227 - 31959268
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||| |||||||||||||||||||||| || ||||||||||    
T  31959227 acaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 23293005 - 23292926
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||| ||||   ||||| |||||| ||||||||||||||| || |||||||||||    
T  23293005 aattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 848011 - 848080
Alignment:
Q  17 tgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||||||||||||||||| | |||| ||||||| ||||||||||||||| |||||| || ||| ||||||    
T  848011 tgttggtgtcggacacgaaacgtgtcgaacaccgggacacacctaatccaaggagtgtccgtgtttcata 848080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||||||||||||| ||||   ||||| |||||||||||||||||||||| || ||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 49431066 - 49431130
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagt 72  Q
    ||||| |||||| |||||||||||||||| ||||  |||||| |||||| ||| |||||||||||    
T  49431066 aattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagt 49431130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 12895293 - 12895214
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| |||||||||||||||| || |   ||| | |||||| ||||||||||||||| |  |||||||||||    
T  12895293 aattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 4157188 - 4157266
Alignment:
Q  7 caattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    |||||| |||||| ||||||||||||||||  |||   |||||  || ||||||||| |||||||| ||||||||||||    
T  4157188 caattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 17876243 - 17876285
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||    
T  17876243 acaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 40784030 - 40784072
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||||||||||| || |||||||||||    
T  40784030 acaccgggacacacctaatccgaggagtgtccgtgcttcatag 40784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 53381572 - 53381530
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||||||||||| || |||||||||||    
T  53381572 acaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 481 - 403
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||| |||||| |||||||||||||||  ||||   ||||| |||||||||||||||||||||| || ||||||||||    
T  481 aattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 28596509 - 28596587
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||||||||||| |||||||||||||||| ||||   ||||  |||||| ||||||||||||||| || ||||||||||    
T  28596509 aattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 18841032 - 18840953
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||| |||||||||  |||   ||||| |||||||||||||||||||||| || |||||||||||    
T  18841032 aattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 38117178 - 38117099
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| ||||||||||||||||||| ||| ||||   ||||| |||||| |||||||||||| || || |||||||||||    
T  38117178 aattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 2438738 - 2438661
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcat 85  Q
    ||||| |||||| ||||||||||||||||  |||   ||||| |||||| ||||||||||||||| || |||||||||    
T  2438738 aattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 15972913 - 15972992
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||| ||||   || || ||||||||||||||||| || | || |||||||||||    
T  15972913 aattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 19580303 - 19580225
Alignment:
Q  9 attataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||| | |||||||||||| ||| ||||  ||||||   ||||| ||||||||| |||| ||||||||||||||    
T  19580303 attataagtatcggtgtcggacacaacacgtgtccaacaccaaaacacatctaatccgaagagtgtctgtgcttcatag 19580225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 27084322 - 27084388
Alignment:
Q  21 ggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||||||| ||||  ||||||  ||||| ||||||| ||||||| ||| ||||||||||    
T  27084322 ggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 44860379 - 44860449
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||||||||| |||||||||| ||||   ||| | ||||||||||||| |||||||| || ||||||||||    
T  44860379 gtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcata 44860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 12668388 - 12668351
Alignment:
Q  51 ggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12668388 ggacacacctaattcgaggagtatccgtgcttcataga 12668351  T

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Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 92875 - 92940
Alignment:
Q  21 ggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||||||||||||||  ||| | |||||||||||| ||||||||||||||| || ||||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 241653 - 241725
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||||||||||||||||| ||||   ||||| |||||| ||||||||||| ||| || ||||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcataga 241725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 236956 - 236914
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||    
T  236956 acaccgggacacacctaatctgaggagtgtctgtgcttcatag 236914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 32287479 - 32287404
Alignment:
Q  11 tataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||| |||| ||||||||||| |||| ||||   ||||| |||||||||||||||||||||| || ||||||||||    
T  32287479 tatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 21880192 - 21880274
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatagagt 90  Q
    ||||| |||||| ||||||||||||||||  |||   ||||| |||||| ||||||||||| ||| || ||||||||||||||    
T  21880192 aattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatagagt 21880274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5409836 - 5409771
Alignment:
Q  22 gtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||| ||||   ||||| |||||| ||||||||||||||| || |||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 598248 - 598327
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||| ||||||| |||||| ||||||||| ||||   ||||| |||||| ||||||||||| ||| || |||||||||||    
T  598248 aattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 3652292 - 3652249
Alignment:
Q  45 acacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    |||| |||||||||||||||||||| |||| |||||||||||||    
T  3652292 acacttggacacacctaatccgaggggtatatgtgcttcataga 3652249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 11272566 - 11272531
Alignment:
Q  51 ggacacacctaatccgaggagtatctgtgcttcata 86  Q
    |||||| |||||||||||||||||||||||||||||    
T  11272566 ggacacgcctaatccgaggagtatctgtgcttcata 11272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 15680849 - 15680928
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    |||||||||||| |||||||||||||||| ||||   |||||  |||||  ||||| |||||||| || |||||||||||    
T  15680849 aattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 21864848 - 21864927
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| | |||||||||||||| ||||   ||||| ||||||  ||||| |||||||| ||||||||||||||    
T  21864848 aattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 55401115 - 55401194
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| |||||| |||||||||||||||| ||||   |||||  ||||| ||||||||||||||| || |||||||||||    
T  55401115 aattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 20503505 - 20503585
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||| |||||| ||||| ||||||||||  |||   ||||| |||||| ||||||||||||||| || ||||||||||||    
T  20503505 aattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcataga 20503585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 27513634 - 27513598
Alignment:
Q  51 ggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27513634 ggacacacctaatccaaggagtatctgtgcttcatag 27513598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 7171541 - 7171620
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| ||||||||||||||||||||||| ||||   |||||  ||||| |||||||| |||||| | | ||||||||||    
T  7171541 aattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 40993354 - 40993275
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||||| |||| ||||||||||||||||  |||   ||||| |||||| ||||||||||||||| ||  ||||||||||    
T  40993354 aattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 14216951 - 14217021
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||| ||||||||||||||| ||||   ||||  |||||||||||||||||| ||| || ||||||||||    
T  14216951 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 14223080 - 14223150
Alignment:
Q  16 gtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcata 86  Q
    ||||| ||||||||||||||| ||||   ||||  |||||||||||||||||| ||| || ||||||||||    
T  14223080 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 21861657 - 21861695
Alignment:
Q  50 tggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  21861657 tggacacacctaatccgaggagtgtccgtgcttcataga 21861695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 8838 - 8918
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcataga 88  Q
    ||||| |||||| |||||||||||||||| ||||   |||||  ||||| ||||||| ||||||| || ||||||||||||    
T  8838 aattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcataga 8918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 3348 - 3427
Alignment:
Q  8 aattataagtgttggtgtcggacacgacaggtgttgaacacctggacacacctaatccgaggagtatctgtgcttcatag 87  Q
    ||||| ||||||  |||||||||| |||| ||| || ||||  |||||| ||||||||||||||| || |||||||||||    
T  3348 aattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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