View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096R-Insertion-2 (Length: 262)
Name: NF3096R-Insertion-2
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096R-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 3664063 - 3663810
Alignment:
| Q |
8 |
aagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttgtcacgattttgaggaaaatttgacaatgtca |
107 |
Q |
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| T |
3664063 |
aagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttgccacgattttgaggaaaatttgacaatgtca |
3663964 |
T |
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| Q |
108 |
tatttgctttattttgtggcgagaaaggaacaaatcgtgacacaatttggaaagcattaattctaaaatttgaaagttaaagagaaattgagacacgatt |
207 |
Q |
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| T |
3663963 |
-atttgctttattttgtggcgagaaaggaacaaatcatgacacaatttggagagcattaattctaaaatttgaaagttaaagagaaatcaaggcacgatt |
3663865 |
T |
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| Q |
208 |
tagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaac |
262 |
Q |
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| T |
3663864 |
tagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaac |
3663810 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 5819911 - 5819994
Alignment:
| Q |
11 |
ttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttgtcacgattttgaggaaaa |
94 |
Q |
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||||||||||| | |||||||||||||| || ||||||||| ||||||||||||| |||||| |||||| ||| | ||||||| |
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| T |
5819911 |
ttggaaaagactacattcaagaatcaagaaagactaaaaattatgccacaaaaatgctacatcgtgtcacaattctaaggaaaa |
5819994 |
T |
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