View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3096R-Insertion-6 (Length: 479)

Name: NF3096R-Insertion-6
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3096R-Insertion-6
NF3096R-Insertion-6
[»] chr8 (5 HSPs)
chr8 (135-479)||(14223004-14223348)
chr8 (265-437)||(14227340-14227512)
chr8 (233-397)||(14229623-14229784)
chr8 (9-73)||(14222879-14222941)
chr8 (149-189)||(11815810-11815850)
[»] chr3 (4 HSPs)
chr3 (135-217)||(16151808-16151890)
chr3 (135-178)||(16152731-16152774)
chr3 (26-71)||(16151954-16151997)
chr3 (400-445)||(17355786-17355831)
[»] chr2 (2 HSPs)
chr2 (148-184)||(18638544-18638580)
chr2 (143-189)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (143-192)||(9878067-9878116)
chr5 (143-192)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (143-189)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (142-180)||(10341030-10341068)
[»] chr7 (1 HSPs)
chr7 (401-453)||(41006851-41006903)
[»] chr1 (1 HSPs)
chr1 (225-257)||(40158374-40158406)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 135 - 479
Target Start/End: Original strand, 14223004 - 14223348
Alignment:
Q  135 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttga 234  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14223004 gaaatgcaacacctgacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttga 14223103  T
Q  235 tcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta 334  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223104 tcagaagtgtcggtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta 14223203  T
Q  335 gtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccat 434  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14223204 gtttgattcttgaggtctaggttttcttagatcacaatttgattgcccaaaattgttgtcgatagcagaaggccaaaaatacgccatttaaacattccat 14223303  T
Q  435 tgcggactatggcaccaccgccgtgggttactcttcacaaattgc 479  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  14223304 tgcggactatggcaccaccgccgtggtttactcttcacaaattgc 14223348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 437
Target Start/End: Original strand, 14227340 - 14227512
Alignment:
Q  265 tattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag 364  Q
    |||||||||||||||||| ||||||||||||| ||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  14227340 tattcattttgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag 14227439  T
Q  365 atcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgc 437  Q
    ||||||||||||||||| | || |||| | ||| || ||||||||||||| || ||| ||||||| |||||||    
T  14227440 atcacactttgattgccgataagtgtttttgatggctgaaggccaaaaatccgtcatataaacatgccattgc 14227512  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 233 - 397
Target Start/End: Original strand, 14229623 - 14229784
Alignment:
Q  233 gatcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttg 332  Q
    ||||||||||||| ||||||||||||| |||| |   ||||||||| ||||||| |  |||||| ||||||||||||||||| |||||||||||||||||    
T  14229623 gatcagaagtgtcagtgctatagagataatataa---attttgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttg 14229719  T
Q  333 tagtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgat 397  Q
    |||||||||||| |||||||||||||  || |||||| |||||||| ||| ||| |||| |||||    
T  14229720 tagtttgattctcgaggtttaggtttgttttgatcactctttgattccccgaaactgttctcgat 14229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 14222879 - 14222941
Alignment:
Q  9 tttggttgatcaataagatgttttcggaatatgggatttcacaccttactatactgaaagcttcg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  14222879 tttggttgatcaataagatgttttcggaatatgggatttcacaccttac--tactgaaagcttcg 14222941  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 11815810 - 11815850
Alignment:
Q  149 gacacgacactgacatgtcgacaccaataatattttgagaa 189  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaa 11815850  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 16151890 - 16151808
Alignment:
Q  135 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16151890 gaaatgcaacaccggacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac 16151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 16152774 - 16152731
Alignment:
Q  135 gaaatgcaacaccggacacgacactgacatgtcgacaccaataa 178  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  16152774 gaaatgcaacatcggacacgacactgacatgtcgacaccaataa 16152731  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 16151997 - 16151954
Alignment:
Q  26 atgttttcggaatatgggatttcacaccttactatactgaaagctt 71  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16151997 atgtttttggaatatgggatttcacaccttac--tactgaaagctt 16151954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 17355831 - 17355786
Alignment:
Q  400 cggaaggccaaaaatacgccatttaaacattccattgcggactatg 445  Q
    ||||||||||||||| |||||| ||||||| ||||||||| |||||    
T  17355831 cggaaggccaaaaattcgccatataaacatgccattgcggcctatg 17355786  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 18638544 - 18638580
Alignment:
Q  148 ggacacgacactgacatgtcgacaccaataatatttt 184  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638544 ggacacgacactgacatgtcgacaccaataatatttt 18638580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 42205919 - 42205873
Alignment:
Q  143 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 189  Q
    ||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  42205919 acaccggacacgacattgacatgccaacaccaataataatttgagaa 42205873  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 9878116 - 9878067
Alignment:
Q  143 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 192  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  9878116 acaccgaacaagacactgacacgtcgacaccaataataatttgagaatat 9878067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 9897966 - 9897917
Alignment:
Q  143 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 192  Q
    |||||||||||| |||| |||  ||||||||||||||| |||||||||||    
T  9897966 acaccggacacggcactcacacatcgacaccaataataatttgagaatat 9897917  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 18192 - 18146
Alignment:
Q  143 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 189  Q
    ||||| ||||||||||||||| ||||||||| |||| ||||||||||    
T  18192 acaccagacacgacactgacacgtcgacaccgataaaattttgagaa 18146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 10341030 - 10341068
Alignment:
Q  142 aacaccggacacgacactgacatgtcgacaccaataata 180  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10341030 aacaccggacatgacactgacatgtcgacaccagtaata 10341068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 41006903 - 41006851
Alignment:
Q  401 ggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccacc 453  Q
    ||||||||| || |||||||| ||||||| |||||| || |||||||||||||    
T  41006903 ggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccacc 41006851  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 40158406 - 40158374
Alignment:
Q  225 acgtatttgatcagaagtgtctgtgctatagag 257  Q
    ||||||||||||||||||||| |||||||||||    
T  40158406 acgtatttgatcagaagtgtcggtgctatagag 40158374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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