View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096R-Insertion-7 (Length: 595)
Name: NF3096R-Insertion-7
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096R-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Complemental strand, 1769835 - 1769249
Alignment:
| Q |
9 |
acatccatgctcaagtcatggataccgggtacaaattgttgcacatgggtaggtgtagggtgtctggtcgacaaacgggtgacaagtttatctttaaccg |
108 |
Q |
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| T |
1769835 |
acatccatgctcaagtcatggataccgggtacaaattgttgcacatgggtaggtgtagggtgtctggacaacaaacgggtgacaagtttatctttaaccg |
1769736 |
T |
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| Q |
109 |
gtgacactgaaaatcctaaaagcttcttgtcaggtacaatctcaccatcactctcaaaactcaaattccttgatggaatctacttgataaacctcctcaa |
208 |
Q |
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| T |
1769735 |
gtgacactgaaaatcctaaaagcttcttgtcaggtacaatctcaccatcactctcaaaactcaaattccttgatggaatctacttgataaacctcctcaa |
1769636 |
T |
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| Q |
209 |
aatttctggtccatttcctgattttcttttcaagctaccaaatctcaaatacatctacattgagaataacacattatctggtccaataccccaaaacata |
308 |
Q |
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| T |
1769635 |
aatttctggtccatttcctgattttcttttcaagctaccaaatctcaaatacatctacattgagaataacacattatctggtccaataccccaaaacata |
1769536 |
T |
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| Q |
309 |
ggcaacatgaaccaattagaagcatttagtctacaaggaaacaaattcacaggaccaattcctagttcaatatctgcattgactaaagtaactcagttaa |
408 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1769535 |
ggcagcatgaaccaattagaagcatttagtctacaagaaaacaaattcacaggaccaattcctagttcaatatctgcattgactaaattaactcagttaa |
1769436 |
T |
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| Q |
409 |
aactaggtaacaattttctcacaggaaccattccagtatcccttaaaaacctaacaaatctcacataccttagtctccaaggaaaccaacttagtggtaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1769435 |
aactaggtaacaattttctcacaggaaccattccagtatcccttaaaaacctaacaaatctcacataccttagtctccaaggaaaccaacttagtggtaa |
1769336 |
T |
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| Q |
509 |
catacctgatattttcacttccttaaaaaaccttattattctcgaactttctcacaacaaattttccgggaatattccactttcaat |
595 |
Q |
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| T |
1769335 |
catacctgatattttcacttccttaaaaaaccttattattctccaactttctcacaacaaattttccgggaatattccactttcaat |
1769249 |
T |
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