View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3096R-Insertion-9 (Length: 808)

Name: NF3096R-Insertion-9
Description: NF3096R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3096R-Insertion-9
NF3096R-Insertion-9
[»] chr4 (2 HSPs)
chr4 (9-653)||(40415470-40416115)
chr4 (689-805)||(40416149-40416265)


Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 653
Target Start/End: Original strand, 40415470 - 40416115
Alignment:
Q  9 aaatgaatgtgattgatcgtaacatgtgtgtcatagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgctacttggatataaa 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  40415470 aaatgaatgtgattgatcgtaacatgtgtgtcacagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgttacttgggtataaa 40415569  T
Q  109 ctgttgccccacgtaccatagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagagctgtttcttgtgccatcttcaacagaacgtgt 208  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40415570 ctgttgccccacgtaccttagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagggctgtttcttgtgccatcttcaacagaacgtgt 40415669  T
Q  209 ctcaaaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaagggaaggnnnnnnnnnn-ttcagggatcaattctagatatca 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           ||||||||||||||||||||||||    
T  40415670 ctcacaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaaaggaaggaaaaaaaaaaattcagggatcaattctagatatca 40415769  T
Q  308 agataaattatcaatattgaatttagtttataatataccccacttccaggatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaacat 407  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40415770 agataaattatcaatagtgaatttagtttataatataccccacttccagaatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaacat 40415869  T
Q  408 gagaggaattgaagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatatnnnnnnntgagaccatcaaagatagtt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  40415870 gagaggaattgaagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatataaaaaaatgagaccatcaaagatagtt 40415969  T
Q  508 gggatgaattgttccagagaaattaagttcgaattctggttgaaacaatcttaattaaactttatttacctcccgagttctatattcactaaaatcccat 607  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40415970 gggatgaattgttccagagaaattaagtttgaattctggttgaaacaatcttaattaaactttatttacctcccgaattctatattcactaaaatcccat 40416069  T
Q  608 tccccttaaaaccggatggtttagataagtggttcttttgttctcg 653  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  40416070 tcccctgaaaaccggatggtttagataagtggttcttttgttctcg 40416115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 689 - 805
Target Start/End: Original strand, 40416149 - 40416265
Alignment:
Q  689 caatgtaaagactatggcagtcactaacaagttcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgct 788  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40416149 caatgtaaagactatggcagtcactaaccagttcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgct 40416248  T
Q  789 cataccaagagttattg 805  Q
    |||||||||||||||||    
T  40416249 cataccaagagttattg 40416265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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