View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_high_3 (Length: 575)
Name: NF3096_high_3
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 365782 - 366216
Alignment:
| Q |
16 |
aaatattcatcacatctctttattatatttaccagcggaaagacggacaattggtaaatatttgtcttacgagtggcgatgaa-gtaatgatttgagaaa |
114 |
Q |
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| T |
365782 |
aaatattcatcacatctctttattatatttaccagcggaaagacggacaattggtaaatatttgtcttaccagtggcgacgaaagtaatgatttgagaaa |
365881 |
T |
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| Q |
115 |
gtgagagtatggaaaatgtctatgagagctgtttgagatttggcgccattgttgatgagactgtggacatttgaggttatggttttgaatttgttgacga |
214 |
Q |
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| T |
365882 |
gtgagagtatggaaaatgtctatgagagctgtttgagattcggcgtcattgttgatgagactgtggacatttgaggttatggttttgaatttgttgacga |
365981 |
T |
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| Q |
215 |
aatggaagtcgtcggaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggttataggaaagagaggttgta |
314 |
Q |
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| T |
365982 |
aatggaaatcgtcagaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggttataggaaagagaggttgta |
366081 |
T |
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| Q |
315 |
atagaacgatgaaggtgttgtatgtaatgagagacatgtatgtaatataatgaggttgaggggaagaattggtttgtaagaatgagaagaatttgaagtc |
414 |
Q |
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| T |
366082 |
atagaacgatgaaggtgttgtatgtaatgagagacatgcatgtaatgtaatgaggttgaggggaagaattggtttgtaagaatgagaagaatttgaagtc |
366181 |
T |
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| Q |
415 |
ttactgaggagtggtgttgatgatgttgcttcttc |
449 |
Q |
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| T |
366182 |
ttactgaggagtggtgttgatgatgttgcttcttc |
366216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 366284 - 366328
Alignment:
| Q |
517 |
cggtatgattcttagatctatttagaattcatttgtgttcatttc |
561 |
Q |
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| T |
366284 |
cggtatgattcttagatctatttagaattcatttgtgttcttttc |
366328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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