View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_high_4 (Length: 407)
Name: NF3096_high_4
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 12617825 - 12618217
Alignment:
| Q |
1 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgtta |
100 |
Q |
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| T |
12617825 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgtta |
12617924 |
T |
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| Q |
101 |
catcaaccaatccatcattctttttgtatttgcaaactgttatggacttgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggat |
200 |
Q |
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| T |
12617925 |
catcaaccaatccatcattctttttgtatttgcaaactgttatggacttgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggat |
12618024 |
T |
|
| Q |
201 |
cgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgcttcacgcgattcacttgccgatgattctctgcgaccacaatactttgatatt |
300 |
Q |
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| T |
12618025 |
cgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgcttcacgcgattcactcgccgatgattctctgcgaccacaatactttgatatt |
12618124 |
T |
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| Q |
301 |
atggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaaaatttggacttgaatcttcatca |
393 |
Q |
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| T |
12618125 |
atggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaaaatttggacttgaatcttcatca |
12618217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27771628 - 27771725
Alignment:
| Q |
1 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgt |
98 |
Q |
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|||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
27771628 |
gtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgt |
27771725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37504085 - 37504191
Alignment:
| Q |
1 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgtta |
100 |
Q |
| |
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|||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| || |||||||| || ||||||||||||||| ||||| |
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| T |
37504085 |
gtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaacactctgtcc |
37504184 |
T |
|
| Q |
101 |
catcaac |
107 |
Q |
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||||||| |
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| T |
37504185 |
catcaac |
37504191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 393
Target Start/End: Original strand, 27771880 - 27772002
Alignment:
| Q |
271 |
gattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaa |
370 |
Q |
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||||||||| |||||||||| || ||||||| ||||| ||||||| || | ||||||| | ||||| | ||| | |||||||| ||||||||||||| |
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| T |
27771880 |
gattctctgtgaccacaatatttggatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaaa |
27771979 |
T |
|
| Q |
371 |
aatttggacttgaatcttcatca |
393 |
Q |
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||| ||| ||||||| |||||| |
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| T |
27771980 |
aatatggttttgaatcatcatca |
27772002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37227869 - 37227974
Alignment:
| Q |
1 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaatctgtta |
100 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| || || |||||||||| | ||||||| |||| |||||| | | ||||||||||||||||| | |
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| T |
37227869 |
gtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaacaatctgatc |
37227968 |
T |
|
| Q |
101 |
catcaa |
106 |
Q |
| |
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|||||| |
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|
| T |
37227969 |
catcaa |
37227974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1867104 - 1867031
Alignment:
| Q |
1 |
gtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactc |
74 |
Q |
| |
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|||||||||||| | | |||||||||||| ||| |||||||||||||||| | ||||||| |||| |||||| |
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| T |
1867104 |
gtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactc |
1867031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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