View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3096_low_1 (Length: 842)
Name: NF3096_low_1
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 193 - 826
Target Start/End: Complemental strand, 40416104 - 40415470
Alignment:
| Q |
193 |
gaaccacttatctaaaccatccggttttaaggggaatgggattttagtgaatatagaactcgggaggtaaataaagtttaattaagattgtttcaaccag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40416104 |
gaaccacttatctaaaccatccggttttcaggggaatgggattttagtgaatatagaattcgggaggtaaataaagtttaattaagattgtttcaaccag |
40416005 |
T |
|
| Q |
293 |
aattcgaacttaatttctctggaacaattcatcccaactatctttgatggtctcannnnnnnatataaaatcttaaatttcatgatataatgttgcaggt |
392 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40416004 |
aattcaaacttaatttctctggaacaattcatcccaactatctttgatggtctcatttttttatataaaatcttaaatttcatgatataatgttgcaggt |
40415905 |
T |
|
| Q |
393 |
aattagcatggagtggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaatcctggaagtggggta |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40415904 |
aattagcatggagtggggaaacttcaattcctctcatgttcctctaacatcgtttgacactattttagatgctgaaagctcaaattctggaagtggggta |
40415805 |
T |
|
| Q |
493 |
tattataaactaaattcaatattgataatttatcttgatatctagaattgatccctgaa-nnnnnnnnnnccttcccttttctcttagatttttgaaaag |
591 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
40415804 |
tattataaactaaattcactattgataatttatcttgatatctagaattgatccctgaatttttttttttccttcctttttctcttagatttttgaaaag |
40415705 |
T |
|
| Q |
592 |
cttatttcaggaatgtatttaggagaaattttgagacacgttctgttgaagatggcacaagaaacagctctatttggaggcagcgtgcctccaaaattga |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40415704 |
cttatttcaggaatgtatttaggagaaattgtgagacacgttctgttgaagatggcacaagaaacagccctatttggaggcagcgtgcctccaaaattga |
40415605 |
T |
|
| Q |
692 |
tgactccatactcactatggtacgtggggcaacagtttatatccaagtagcactgacatttcaggttaaatttgttgtcaatgtctaacaccgagacgac |
791 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40415604 |
tgactccatactcactaaggtacgtggggcaacagtttatacccaagtaacactgacatttcaggttaaatttgttgtcaatgtctaacaccgagacgac |
40415505 |
T |
|
| Q |
792 |
tatgacacacatgttacgatcaatcacattcattt |
826 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40415504 |
tgtgacacacatgttacgatcaatcacattcattt |
40415470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 40416279 - 40416139
Alignment:
| Q |
18 |
agacaatgtggcttcaataactcttggtatgagcacaaatgctgcttatgttgaaccagcacaagaaagtgagcttgcacgatctcccaattcaaatgaa |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40416279 |
agacaatgtggctgcaataactcttggtatgagcacaaatgctgcttatgttgaaccagcacaagaaagtgagcttgcacgatctcccaattcaaatgaa |
40416180 |
T |
|
| Q |
118 |
cttgttagtgactgccatagtctttacattgttttttacgc |
158 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40416179 |
ctggttagtgactgccatagtctttacattgttttttacgc |
40416139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University