View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3096_low_11 (Length: 273)

Name: NF3096_low_11
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3096_low_11
NF3096_low_11
[»] chr8 (3 HSPs)
chr8 (144-260)||(14223004-14223120)
chr8 (18-82)||(14222879-14222941)
chr8 (158-198)||(11815810-11815850)
[»] chr3 (3 HSPs)
chr3 (144-226)||(16151808-16151890)
chr3 (144-187)||(16152731-16152774)
chr3 (35-80)||(16151954-16151997)
[»] chr2 (2 HSPs)
chr2 (157-193)||(18638544-18638580)
chr2 (152-198)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (152-201)||(9878067-9878116)
chr5 (152-201)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (152-198)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (151-189)||(10341030-10341068)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 14223004 - 14223120
Alignment:
Q  144 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttga 243  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14223004 gaaatgcaacacctgacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttga 14223103  T
Q  244 tcagaagtgtctgtgct 260  Q
    ||||||||||| |||||    
T  14223104 tcagaagtgtcggtgct 14223120  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14222879 - 14222941
Alignment:
Q  18 tttggttgatcaataagatgttttcggaatatgggatttcacaccttactatactgaaagcttcg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  14222879 tttggttgatcaataagatgttttcggaatatgggatttcacaccttac--tactgaaagcttcg 14222941  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 11815810 - 11815850
Alignment:
Q  158 gacacgacactgacatgtcgacaccaataatattttgagaa 198  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaa 11815850  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 16151890 - 16151808
Alignment:
Q  144 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac 226  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16151890 gaaatgcaacaccggacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac 16151808  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 16152774 - 16152731
Alignment:
Q  144 gaaatgcaacaccggacacgacactgacatgtcgacaccaataa 187  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  16152774 gaaatgcaacatcggacacgacactgacatgtcgacaccaataa 16152731  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 16151997 - 16151954
Alignment:
Q  35 atgttttcggaatatgggatttcacaccttactatactgaaagctt 80  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16151997 atgtttttggaatatgggatttcacaccttac--tactgaaagctt 16151954  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 18638544 - 18638580
Alignment:
Q  157 ggacacgacactgacatgtcgacaccaataatatttt 193  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638544 ggacacgacactgacatgtcgacaccaataatatttt 18638580  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 42205919 - 42205873
Alignment:
Q  152 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 198  Q
    ||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  42205919 acaccggacacgacattgacatgccaacaccaataataatttgagaa 42205873  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9878116 - 9878067
Alignment:
Q  152 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 201  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  9878116 acaccgaacaagacactgacacgtcgacaccaataataatttgagaatat 9878067  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9897966 - 9897917
Alignment:
Q  152 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 201  Q
    |||||||||||| |||| |||  ||||||||||||||| |||||||||||    
T  9897966 acaccggacacggcactcacacatcgacaccaataataatttgagaatat 9897917  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 18192 - 18146
Alignment:
Q  152 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 198  Q
    ||||| ||||||||||||||| ||||||||| |||| ||||||||||    
T  18192 acaccagacacgacactgacacgtcgacaccgataaaattttgagaa 18146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 10341030 - 10341068
Alignment:
Q  151 aacaccggacacgacactgacatgtcgacaccaataata 189  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10341030 aacaccggacatgacactgacatgtcgacaccagtaata 10341068  T

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