View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_low_12 (Length: 270)
Name: NF3096_low_12
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 47818604 - 47818852
Alignment:
| Q |
17 |
atgtttaaaattttgagaatttacgaagaagaagtgtt-ggttggagtgggaaattgcagttcttttttgtgaagaagatagatagatagaagaagaagt |
115 |
Q |
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| T |
47818604 |
atgtttaaaattttgagaatttacgaagaagaagtgtttggttggagtgggaaattgcagttcttttttgtgaagaagatagatagatagaagaagaagt |
47818703 |
T |
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| Q |
116 |
taaacctaaactcattg---------------aattgaatggctttgacaatctcaaacatacttcattgccctaaattcaacaacaacaataattcatc |
200 |
Q |
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| T |
47818704 |
taaacctaaactcattgaattgaattgaattgaattgaatggctttgacaatctcaaacatacttcattgccctaaattcaacaacaacaataattcatc |
47818803 |
T |
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| Q |
201 |
caaccatttccgttcccaattttcaacctctctcaggtaacactcactc |
249 |
Q |
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| T |
47818804 |
caaccatttccgttcccaattttcaacctctctcaggtaacactcactc |
47818852 |
T |
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