View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_low_13 (Length: 248)
Name: NF3096_low_13
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 1769835 - 1769605
Alignment:
| Q |
18 |
acatccatgctcaagtcatggataccgggtacaaattgttgcacatgggtaggtgtagggtgtctggtcgacaaacgggtgacaagtttatctttaaccg |
117 |
Q |
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| T |
1769835 |
acatccatgctcaagtcatggataccgggtacaaattgttgcacatgggtaggtgtagggtgtctggacaacaaacgggtgacaagtttatctttaaccg |
1769736 |
T |
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| Q |
118 |
gtgacactgaaaatcctaaaagcttcttgtcaggtacaatctcaccatcactctcaaaactcaaattccttgatggaatctacttgataaacctcctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1769735 |
gtgacactgaaaatcctaaaagcttcttgtcaggtacaatctcaccatcactctcaaaactcaaattccttgatggaatctacttgataaacctcctcaa |
1769636 |
T |
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| Q |
218 |
aatttctggtccatttcctgattttcatttc |
248 |
Q |
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| T |
1769635 |
aatttctggtccatttcctgattttcttttc |
1769605 |
T |
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