View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_low_14 (Length: 235)
Name: NF3096_low_14
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 54789594 - 54789808
Alignment:
| Q |
8 |
aattagggttaagagtgttacttgaacttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaactgcgtttttcattttattttatgtca |
107 |
Q |
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| T |
54789594 |
aattagggttaagagtgttacttgaacttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaactgcgtttttcattttattttatgtca |
54789693 |
T |
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| Q |
108 |
ggggttatgttaatttggagatatgtgatttttagttgaatacctatgtgtgaaagtttaaatagtattatttctctatctgtattttttcttcctattc |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54789694 |
ggggatatgttaatttggagatatgtgatttttagttgaatacctatgtgtgaaagtttaaatagtattatttctctatctgtattttttcttcctattc |
54789793 |
T |
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| Q |
208 |
ttagctctgcatttt |
222 |
Q |
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||||||||||||||| |
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| T |
54789794 |
ttagctctgcatttt |
54789808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 52282320 - 52282438
Alignment:
| Q |
97 |
attttatgtcaggggttatgttaatttggagatatgtgatttttagttgaatacctatgtgtgaaagtttaaatagtattatttctctatctgtattttt |
196 |
Q |
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| T |
52282320 |
attttatgtcagaggttatgttattttggagatatgtgatttttagttgaataccta----tgaaagtttaaatgttattatttttctatccg---ttta |
52282412 |
T |
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| Q |
197 |
tcttcctattcttagctctgcatttt |
222 |
Q |
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| T |
52282413 |
ttttcccattcctagctctgcatttt |
52282438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 54782173 - 54782128
Alignment:
| Q |
35 |
ttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaa |
80 |
Q |
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| T |
54782173 |
ttcatgaacttgaaataaatgctgcattgtgcaggatcagtaacaa |
54782128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 54779425 - 54779391
Alignment:
| Q |
136 |
tttttagttgaatacctatgtgtgaaagtttaaat |
170 |
Q |
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| T |
54779425 |
tttttagttgaatacctatgtgtgaaagtttaaat |
54779391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 54782064 - 54782019
Alignment:
| Q |
98 |
ttttatgtcaggggttatgttaatttggagatatgtgatttttagtt |
144 |
Q |
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| T |
54782064 |
ttttatgtcaggg-ttatgttaatttggagatatgtggtttttagtt |
54782019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 52282207 - 52282258
Alignment:
| Q |
29 |
ttgaacttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaa |
80 |
Q |
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| T |
52282207 |
ttgaacttcatgaacttgaagtaaattctgcattgtgcatgaacggcaacaa |
52282258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 19295635 - 19295849
Alignment:
| Q |
8 |
aattagggttaagagtgttacttgaacttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaactgcgtttttcattttattttatgtca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19295635 |
aattagggttaagagtgttacttgaacttcatgaacttgaaataaatgctgcattgtgcaggatcggtaacaactgcgttttctattttattttatgtca |
19295734 |
T |
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| Q |
108 |
ggggttatgttaatttggagatatgtgatttttagttgaatacctatgtgtgaaagtttaaatagtattatttctctatctgtattttttcttcctattc |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19295735 |
ggggatatgttaatttggagatatgtgatttttagttgaatacctatgtgtgaaagtttaaatagtattatttctctatctgtattttttcttcctattc |
19295834 |
T |
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| Q |
208 |
ttagctctgcatttt |
222 |
Q |
| |
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||||||||||||||| |
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| T |
19295835 |
ttagctctgcatttt |
19295849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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