View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_low_3 (Length: 659)
Name: NF3096_low_3
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 56 - 569
Target Start/End: Original strand, 5069732 - 5070247
Alignment:
| Q |
56 |
taatagtaagaacaaacaaacaaataaatagcaaacacaagaaattaacaacatacttcttataaaataaattaacaacatacaacaaaatgagaagaag |
155 |
Q |
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| T |
5069732 |
taatagtaagaacaaacaaacaaataaatagcaaacacaagaaattaacaacatacttcttataaaataaattaacaacatacaacaaaatgagaagaag |
5069831 |
T |
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| Q |
156 |
aaacaaattaatggatagtattgtcgctaacatattagtggcctgttgtaggacacactacctacctagtagtcactattaataagaataaacctacata |
255 |
Q |
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| T |
5069832 |
aaacaaattaatggatagtattgtggctaacatattagtggcctgtagtaggacgcactacctacctagtagtcactattaataagaataaacctactta |
5069931 |
T |
|
| Q |
256 |
aaatctaaagatttcattgttagttatcttaaaataaaaacaatttttcaggtccatgaaaatctcttatacttcaccacagccattggagcagacggca |
355 |
Q |
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| T |
5069932 |
aaatccaaagatttcattgttagttatcttaaaataaaaacaatttttaaggtccatgaaaatctcttatacttcaccacagccattggagcagacggca |
5070031 |
T |
|
| Q |
356 |
gtagcatcacaaaattttgaaacttctgcaaataaattaatacttcatcattgtttca---tataactgtcgtttaagaccagacatttggacagtattt |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
5070032 |
gtagcatcacaaaattttgaaacttctgcaaataaattaatacttcatcattgtctcatagtataactgtcgtttaagaccagacatttggacaatattt |
5070131 |
T |
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| Q |
453 |
aagaccagacacatatacttgctccatcatattacgtaatctcatttgagttatccacgatccttnnnnnnntactaccagttgtgtttaatttattgat |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5070132 |
aagaccagacacatatacttgctccatcatattacgtaatctcatttgagttatccacgatccttaaaaaaatactaccagttgtgtttaatttattgat |
5070231 |
T |
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| Q |
553 |
gataaaacatttgagat |
569 |
Q |
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||| ||||||||||||| |
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| T |
5070232 |
gat-aaacatttgagat |
5070247 |
T |
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