View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3096_low_6 (Length: 380)
Name: NF3096_low_6
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 32302513 - 32302176
Alignment:
| Q |
27 |
aacccaaaagcgtgatatagaacaaccctataatgtaaagtagccacaaatcctaatctagagcaatcaactacgttaccaagttggatatttgataatg |
126 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32302513 |
aacccaaaagtgtgatatagaacaaccctataatataaagtagccacaaatcctaatctagagcaatcaactacgttacgaagttggatatttgataatg |
32302414 |
T |
|
| Q |
127 |
atgtttgaactcgaccaccaacacaataacaagtccaaacaccaacaactcactatgaaaacatcaaaataaatgtcatttcagccactctatccaaatt |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
32302413 |
atgtttaaactcgaccaccaacacaataacgagtccaaacaccaacaactcactatgaaaacatc-aaataaatgtcatttcagccactctatgcaaatt |
32302315 |
T |
|
| Q |
227 |
caatcatgaaggatcaaaacggatttacgaaccacccccaaac---tcaatcgaaagatctaaacctacgattctaaagaaacgatcaatcaccgcccac |
323 |
Q |
| |
|
||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32302314 |
caaacatgaaggatcgaaacagatttacgaaccacccccaaactcttcaatcgaaagatctaaacctacgattctaaagaaacgatcaatcacctcccac |
32302215 |
T |
|
| Q |
324 |
cggcactgtgacagacggacactaaaacaacaaccaagc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
32302214 |
cggcactgtgacagacggacactaaaactacaatcaagc |
32302176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 32275811 - 32275767
Alignment:
| Q |
153 |
taacaagtccaaacaccaacaactcactatgaaaacatcaaaata |
197 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32275811 |
taacgagtccaaacaccaacaattcactatgaaaacatcaaaata |
32275767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 32275949 - 32275889
Alignment:
| Q |
5 |
caatgtaattaatacaaacaacaacccaaaagcgtgatatagaacaaccctataatgtaaa |
65 |
Q |
| |
|
||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32275949 |
caatgcaattgaaacaaacaacaactcaaaagcgtgatatagaaaaaccctataatataaa |
32275889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University