View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3096_low_9 (Length: 291)
Name: NF3096_low_9
Description: NF3096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3096_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 3663805 - 3664063
Alignment:
| Q |
15 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaa |
114 |
Q |
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| T |
3663805 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgccttgatttctctttaactttcaaattttagaa |
3663904 |
T |
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| Q |
115 |
ttaatgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgta |
214 |
Q |
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| T |
3663905 |
ttaatgctctccaaattgtgtcatgatttgttcctttctcgccacaaaataaagcaaat-tgacattgtcaaattttcctcaaaatcgtggcaagatgta |
3664003 |
T |
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| Q |
215 |
ccatttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaactt |
274 |
Q |
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| T |
3664004 |
ccatttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaactt |
3664063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 5820163 - 5819911
Alignment:
| Q |
18 |
aagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaatta |
117 |
Q |
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| T |
5820163 |
aagttgggtttttatggatctcaatatgtaacgttaaaatcgtctcccgatttgataaattgtgtccctatttctcatcaaatttcaaatttcagatttg |
5820064 |
T |
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| Q |
118 |
atgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgtacca |
217 |
Q |
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| T |
5820063 |
acgctcttcgattcgtgtcatgattttctcttttcggaccacaaaataatgtgaat-tgaaaagctccatttttccttagaattgtgacacgatgtagca |
5819965 |
T |
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| Q |
218 |
tttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaa |
271 |
Q |
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| T |
5819964 |
tttttgtggcataatttttagtctttcttgattcttgaatgtagtcttttccaa |
5819911 |
T |
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