View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_1 (Length: 729)
Name: NF3097_high_1
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 231 - 715
Target Start/End: Complemental strand, 45342084 - 45341602
Alignment:
| Q |
231 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggttatgtgcgtatgtatgtttgttgaatcgtatattgaacatttgtttgt |
330 |
Q |
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| T |
45342084 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggttatgtgcgtatgtatgtttgttgaatcgtatattgaacatttgtttgt |
45341985 |
T |
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| Q |
331 |
ttttgtcgttatgcgtaccgttactacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggttt |
430 |
Q |
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| T |
45341984 |
ttttgtcgttatgcgtaccgttattacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggttt |
45341885 |
T |
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| Q |
431 |
gaggaagaaggtnnnnnnnnnnnnnnnnnn---tacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttccttagc |
527 |
Q |
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| T |
45341884 |
gaggaagaaggtatcgacaacaacaacaacaactacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttcctt--- |
45341788 |
T |
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| Q |
528 |
ttgtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttattcattaaatttggaagaatgattatttttgttttctagagatttg |
627 |
Q |
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| T |
45341787 |
--gtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttattcattaaatttgggagaatgattatttttcttttctagagatttg |
45341690 |
T |
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| Q |
628 |
tcttttccttgaatctgtgtgttcattttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
715 |
Q |
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| T |
45341689 |
tctttttcttgaatctgtgtgttcattttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
45341602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 45342160 - 45342116
Alignment:
| Q |
192 |
caaaaatcactgttaatttgtagattcattgctattgctatgatt |
236 |
Q |
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| T |
45342160 |
caaaaatcactgttaatttgtagattcattgctattgctatgatt |
45342116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 45342272 - 45342214
Alignment:
| Q |
79 |
tactctaagaaaccttcacatggaaccgcaacgtgttatcgtccttttcaccgtcatcac |
138 |
Q |
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| T |
45342272 |
tactctaagaa-ccttcacatggaaccgcaacgtgttgtcgtcattgtcaccgtcatcac |
45342214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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