View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_100 (Length: 215)
Name: NF3097_high_100
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_100 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26207060 - 26206846
Alignment:
| Q |
1 |
gtttccatgtttaagacacaagttgagatgagaaatattaatcaacttttctttccaagtaaacacaatttgaagctctaccttgtaatctttctcacgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
26207060 |
gtttccatgtttaagacacaagttgagatgagaaatattactcaacttttctttccaagtaaatacaatttgaagctctaccttttaatctttctcacgc |
26206961 |
T |
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| Q |
101 |
atctttctcgtgtattctgaacaagtatagatgattctgtttttgtcttttatttgcattataagttcattggaataagtttataggtcatttgtctcct |
200 |
Q |
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| T |
26206960 |
atatttctcgtgtattctgaacaagtatagatgatcctgtttttgtcttttatttgcattatgagttcattggaataagtttataggtcatttgtctcct |
26206861 |
T |
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| Q |
201 |
ctatttgttcttttc |
215 |
Q |
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||| ||||||||||| |
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| T |
26206860 |
ctaattgttcttttc |
26206846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26226595 - 26226386
Alignment:
| Q |
1 |
gtttccatgtttaagacacaagttgagatgagaaatattaatcaacttttctttccaagtaaacacaatttgaagctctaccttgtaatctttctcacgc |
100 |
Q |
| |
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||||| ||||||| | ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||| |||||||||| |||||||||| |||| |
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| T |
26226595 |
gtttctatgtttataaaacaagttgagaagagaaatattactcaacttttcttaccaa----acacaatttgaggctctaccttttaatctttctaacgc |
26226500 |
T |
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| Q |
101 |
atctttctcgtgtattctgaacaagtatagatgattctgtttttgtcttttatttgcattataagttcattggaataagtttataggtcatttgtctcct |
200 |
Q |
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||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| |
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| T |
26226499 |
atctttctcatgcatcgtgaacaagtatagatgattctgtttt-gtcttttatttgcattataagatcattggaataagtctttaggtcatttgtttcct |
26226401 |
T |
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| Q |
201 |
ctatttgttcttttc |
215 |
Q |
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||| ||||||||||| |
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| T |
26226400 |
ctacttgttcttttc |
26226386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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