View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_102 (Length: 213)
Name: NF3097_high_102
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_102 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5372376 - 5372558
Alignment:
| Q |
18 |
ccagtgactgcagccccaaagggattagtctcccttcaattgaatcaactccaagcagtggaaaacttcctacttggaagaacctttattaaattattat |
117 |
Q |
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| T |
5372376 |
ccagtgactgcagccccaaagggattagtctcccttcaattgaatcaactccaagcagtggaaaacttcctacttggaagaacctttattaaattattat |
5372475 |
T |
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| Q |
118 |
catgccaacaaatagcatacataagagatgctaaaacacttgtatatggaataccttccatatatcatcatagttcttcattt |
200 |
Q |
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| T |
5372476 |
catgccaacaaatagcatacataagagatgctaaaacacttgtatatggaataccttccatatattatcatagttcttcattt |
5372558 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 5357757 - 5357809
Alignment:
| Q |
129 |
atagcatacataagagatgctaaaacacttgtatatggaataccttccatata |
181 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
5357757 |
atagcacacataagagatgctaaaacacttgtatatgcaatgccttccatata |
5357809 |
T |
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