View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_15 (Length: 444)
Name: NF3097_high_15
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 31437799 - 31437616
Alignment:
| Q |
18 |
ttttccattacccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcc |
117 |
Q |
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| T |
31437799 |
ttttccattacccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcc |
31437700 |
T |
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| Q |
118 |
tccaagaagttactccgaggatagtacctacttttgaaaatacggctcatcaaggagttagtatcagacataagcctccaactc |
201 |
Q |
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| T |
31437699 |
tccaagaagttactccggggatagtacctgcttttgaaaatacggctcatcaaggagttagcatcagacataagcctccaactc |
31437616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 31192798 - 31192621
Alignment:
| Q |
24 |
attacccaccacccatctgctgcccttttctagtacttctctgccacacatgatgctcctccaagcataacttggttggtatcctatggttgcctccaag |
123 |
Q |
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| T |
31192798 |
attacccaccacccatctggtgcccttttctagtacttctctgccacacatgatgctcctccaagcatagcttggttggtatcctatggttgcctccaag |
31192699 |
T |
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| Q |
124 |
aagttactccgaggatagtacctacttttgaaaatacggctcatcaaggagttagtatcagacataagcctccaactc |
201 |
Q |
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| T |
31192698 |
acgttacaccagggatagtacctacttttgaaaatacggctcatcaaggagttagcatcagacataagcctccaactc |
31192621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 200 - 437
Target Start/End: Original strand, 23458712 - 23458946
Alignment:
| Q |
200 |
tcagtgttctcttcaatgtaagtcttacatttcttttccaaatcaccaaacctttgttctagacaacgaacaagtgccgcagattgaatctgcgctgata |
299 |
Q |
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| T |
23458712 |
tcagcgttctcttcaatgtaagtcttacatttctttttcaaatcaccaaaactttgttctagacaacgaacaagtgccacagattgaatcggcgctgata |
23458811 |
T |
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| Q |
300 |
gcaaagcatgaaaacacttttctgattcccacttcgcaaatacttcacgatacttttctgtaatgaaatacgtatcaacgaagtttccaaatggaaaatt |
399 |
Q |
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| T |
23458812 |
gcaaaacatggaaa---atttctgattcccacttcgcaaattctttatgatacttttctgtaatgaaatgcttatcaacgaagtcttcatatggaaaatt |
23458908 |
T |
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| Q |
400 |
gtcatcccggattgatttgccgtcactgttctctgctg |
437 |
Q |
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| T |
23458909 |
gtcatccccgattgacttgccgttaccattctctgctg |
23458946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 425
Target Start/End: Complemental strand, 23449169 - 23449080
Alignment:
| Q |
336 |
caaatacttcacgatacttttctgtaatgaaatacgtatcaacgaagtttccaaatggaaaattgtcatcccggattgatttgccgtcac |
425 |
Q |
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| T |
23449169 |
caaatgcttcacaatccttttctgcaatgaattgcttatcaacaaagtctccaaatggaaaattgtcatcccagattgatgtgccatcac |
23449080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 23462775 - 23462832
Alignment:
| Q |
363 |
tgaaatacgtatcaacgaagtttccaaatggaaaattgtcatcccggattgatttgcc |
420 |
Q |
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|||||| | ||||||| |||| ||||||||||||||||||||||| ||||||| |||| |
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| T |
23462775 |
tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagattgatgtgcc |
23462832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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