View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_16 (Length: 444)
Name: NF3097_high_16
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 30318261 - 30318658
Alignment:
| Q |
18 |
ccatcgagagttacaaaccgataggtttggaagaagactcccattcagtggatatcaagagtcaacttctaataaattttatatttatgtcagaagttgg |
117 |
Q |
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| T |
30318261 |
ccatcgagagttacaaaccgataggtttggaagaagacccccgttcagtggatatcaagagtcaactcctaataaattttatatttatgtcagaagttgg |
30318360 |
T |
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| Q |
118 |
tttttgtattttcagtgcatcctttatactcaaccttaacaacattcagaagtttaannnnnnnnnnnnnnnnncctctcaaatcaccacccttataaga |
217 |
Q |
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| T |
30318361 |
tttttgtattt-------------------caaccttaacaacattcagaagtttaattttttaggttttttttcctctcaaatcaccacccttataaga |
30318441 |
T |
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| Q |
218 |
aatataatctttctaccatannnnnnnngtcaaagacaatgtaaatattcaaaattccctcgaaatagaaaatatgtgttttttccttcttaagcgaatg |
317 |
Q |
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| T |
30318442 |
aatataatctttctaccatattatttttgtcaaagacaatgtaaatattcaaaattccctcgaaatagaaaatatgtgttttttccttcttaagcgaatg |
30318541 |
T |
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| Q |
318 |
aaagcattcaatagctacaaaagcattattagtaataagccttccatccagaaaaacactatgttcaacatcaatagcttcgggtagtgtgtttgattct |
417 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30318542 |
aaagcattcaatagctaaaaaagcattattagtgataagccttccatccagaaaaacactatgttcaacatcaatagcttcgggtagtgtgtttgattct |
30318641 |
T |
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