View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_19 (Length: 420)
Name: NF3097_high_19
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 402
Target Start/End: Complemental strand, 3162388 - 3162015
Alignment:
| Q |
5 |
gaggagcacagaggtggtctatgacacactcagcagtcagcaatccttttttgggataaaaa-ctcaactttacctccaagcaagtcctaaaaataaatt |
103 |
Q |
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| T |
3162388 |
gaggatcacagaggtggcctatgacacactcagcagtcagcaaccctttattgggataaaaaactcaactttacctccaagcaagtcctaaaaataaatt |
3162289 |
T |
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| Q |
104 |
gatagataaacaaataaataacaannnnnnnnnnnnnnnnnnacccaaaagtagttcaaatttactattataaccagattaattcattattagtcatatc |
203 |
Q |
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| T |
3162288 |
gatagataaacaaataaataacaattttattttattttttttacccaaaagtagttcaaatttactattataaccagattaattcattattagtcatatc |
3162189 |
T |
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| Q |
204 |
atgtttttgtacagaagttatgtttatcaattaatgttgtaacagaatatgaatttagttacagttagttcagtgagcttgagcctcttaaggcacaatc |
303 |
Q |
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| T |
3162188 |
atgtttttgtacagaagttatgtttatca-----------aacagaatatgaatttagttacagttagttcagtgagcttgagcctct------------ |
3162112 |
T |
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| Q |
304 |
catatatcaaacacagtgtacttaattagttaaatcaatagaatattttcagagttttcaaagatcaaagagctttcgctttgatgtgaatcaatcatc |
402 |
Q |
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| T |
3162111 |
--tatatcaaacacagtgtacttaattagttaaatcaatcgaatattttcagagttttcaaagatcaaagagctttcgctttgtggttaatcaatcatc |
3162015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 6808759 - 6808647
Alignment:
| Q |
262 |
ttacagttagttcagtgagcttgagcctcttaaggcacaatccatatatcaaacacagtgtacttaatta-gttaaatcaatagaatattttcagagttt |
360 |
Q |
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|||||||||||| ||| ||||||||||||||| ||| ||| || ||||| ||| |||| ||| |||| ||||| ||||| ||| ||||||||| ||| |
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| T |
6808759 |
ttacagttagtttagttagcttgagcctcttagggctcaacccctatatagtacaaagtgagctttattatgttaattcaattgaacattttcagacttt |
6808660 |
T |
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| Q |
361 |
tcaaagatcaaag |
373 |
Q |
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| T |
6808659 |
tcatagatcaaag |
6808647 |
T |
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