View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_20 (Length: 418)
Name: NF3097_high_20
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 49698446 - 49698838
Alignment:
| Q |
9 |
gagatgaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctagtgttgcatggtgattaatcatataatgattg |
108 |
Q |
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| T |
49698446 |
gagaagaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctggtgttgcatggtgattaatcatataatgattg |
49698545 |
T |
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| Q |
109 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatg |
208 |
Q |
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| T |
49698546 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatg |
49698645 |
T |
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| Q |
209 |
atgtatgaaagccacaacgatgatgatgccttagatcatgagagaaatatgaacatgatggaaaatcataatggagatggaattctcccggaacacgatg |
308 |
Q |
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| T |
49698646 |
atgtatgaaagccacaacgatgatgatgccttagatcatgagagaaatatgaacatgatggaaaatcataatggagatggaattctcccggaacacgatg |
49698745 |
T |
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| Q |
309 |
atggcagcatgtacagcctcaccggcggagctccacttccgcctctaggcgatttcggagccaaaagaaccaaactccgtcgaagaaccatct |
401 |
Q |
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| T |
49698746 |
atggcagcatgtacagcctcactggcggagctccacttccgcctctaggcgatttcggagccaaaagaaccaaactccgtcgaagaaccatct |
49698838 |
T |
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