View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_21 (Length: 417)
Name: NF3097_high_21
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 33309920 - 33310134
Alignment:
| Q |
18 |
aagacaaagaggaaggaacctcgaatacgattatacgaataaacccatcttctctatcaaaattcaatatctcgcaaacgatatatcgtacaaattctcg |
117 |
Q |
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| T |
33309920 |
aagacaaagaggaaggaacctcgaatacgattatacgaataaacccatcttctctatcaaaattcaatatctcgtacacgatatatcgtacaaattctcg |
33310019 |
T |
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| Q |
118 |
tgtatttttcacaatcgttatcttaattatttatttattacaataattaagcgatttgcnnnnnnncgttaacatcatggtgtttctccgttataatggg |
217 |
Q |
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| T |
33310020 |
tgtatttttcacaatcgttatcttaattatttatttattacaataattaagcgatttgcaaaaaaacgttaacatcatggtgtttctccgttataatggg |
33310119 |
T |
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| Q |
218 |
acactataaataacg |
232 |
Q |
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| T |
33310120 |
acactataaataacg |
33310134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 33310197 - 33310312
Alignment:
| Q |
295 |
agaaccttcaattcttcatcaatggcgtttaagaaaaccctaactcaacgtctcttaagcttaaccaaaatctcatcacaatctttatcaaattgtcgca |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310197 |
agaaccttcaattcttcatcaatggcgtttaagaaaaccctaactcaacgtctcttaagcttaaccaaaatctcatcacaatctttatcaaattgtcgca |
33310296 |
T |
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| Q |
395 |
tttcatcttcatctct |
410 |
Q |
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|||||||||||||||| |
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| T |
33310297 |
tttcatcttcatctct |
33310312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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