View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_high_22 (Length: 410)

Name: NF3097_high_22
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_high_22
NF3097_high_22
[»] chr2 (4 HSPs)
chr2 (15-404)||(43874974-43875358)
chr2 (16-397)||(43867300-43867681)
chr2 (46-319)||(43863886-43864160)
chr2 (64-188)||(38989109-38989233)
[»] chr4 (2 HSPs)
chr4 (21-188)||(52186779-52186946)
chr4 (94-134)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (64-170)||(5312-5418)
[»] chr3 (10 HSPs)
chr3 (57-191)||(476027-476161)
chr3 (81-191)||(480963-481073)
chr3 (18-187)||(778167-778336)
chr3 (64-170)||(1304694-1304800)
chr3 (71-170)||(1186233-1186332)
chr3 (71-170)||(1204297-1204396)
chr3 (108-170)||(5361015-5361077)
chr3 (105-186)||(13490896-13490977)
chr3 (106-179)||(7125963-7126036)
chr3 (105-165)||(25601743-25601803)
[»] chr5 (1 HSPs)
chr5 (98-170)||(33958061-33958133)
[»] chr7 (4 HSPs)
chr7 (105-165)||(6844163-6844223)
chr7 (102-157)||(32413657-32413712)
chr7 (105-148)||(9235846-9235889)
chr7 (105-179)||(6889182-6889256)
[»] chr6 (5 HSPs)
chr6 (105-157)||(7115536-7115588)
chr6 (105-157)||(7120608-7120660)
chr6 (105-157)||(7124012-7124064)
chr6 (105-157)||(7140726-7140778)
chr6 (105-157)||(8680340-8680392)
[»] chr1 (1 HSPs)
chr1 (103-135)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 43875358 - 43874974
Alignment:
Q  15 aataaggacaacaaaaatgaagacattatcagtaacttgattgattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  43875358 aataaggacaacaaaaatgaagacattatcagtaacttgatcgattgtattctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaactt 43875259  T
Q  115 gcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcatactttaggaccaaggaaactttcagcgtattcct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||    
T  43875258 gcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatg---ttcatactttaggaccaaggaaactttcagtgtattcct 43875162  T
Q  215 gtctcaatttttatctctttgcgatggctcaaccactatacacactctcgatgttgactgcccatattacatggagccaagtatattccaaattattata 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  43875161 gtctcaatttttatctctttgcgatggctcaaccactatacaca--ctcgatgttgactgccgatattacattgagccaagtatattccaaattattata 43875064  T
Q  315 aaatatgctatcacacacaacatccaacacttactaatggatatcccttgttgtattgacctctttccctcttgcttcttttcatctcac 404  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43875063 aaatatgctatcacacacaatatccaacacttactaatggatatcccttgttgtattgacctctttccctcttgcttcttttcatgtcac 43874974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 43867681 - 43867300
Alignment:
Q  16 ataaggacaacaaaaatgaagacattatcagtaacttgattgattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttg 115  Q
    ||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||| || ||||||| || |||||||||||||||| |||||||||    
T  43867681 ataagcacaacgaaaacgaagacattatcagtaacttgactgattgtattctcattcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttg 43867582  T
Q  116 cattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcatactttaggaccaaggaaactttcagcgtattcctg 215  Q
    ||||||||||||||||||||||| ||| |||||| ||||||| ||| |||||||| |||||||  ||||||||||| || ||| |||   || |||||||    
T  43867581 cattttgtccaaaagatggatcactctctggaagggtcttcctactattacattaagttcttcgaactttaggaccgagaaaagtttagccgaattcctg 43867482  T
Q  216 tctcaatttttatctctttgcgatggctcaaccactatacacactctcgatgttgactgcccatattacatggagccaagtatattccaaattattataa 315  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||  | |||||||| |||||||    
T  43867481 tctcactttttatctcttcgcgatggctcaaccactatacacactctcgatgttcactgcctatattacttggagcctagcctgttccaaatgattataa 43867382  T
Q  316 aatatgctatcacacacaacatccaacacttactaatggatatcccttgttgtattgacctctttccctcttgcttcttttc 397  Q
    |||| |||||  | |||||  ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  43867381 aatacgctatttcccacaatgtccaacacttactaatgaatttcccttgtcgtattgacctctttccctcttgcttcttttc 43867300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 46 - 319
Target Start/End: Complemental strand, 43864160 - 43863886
Alignment:
Q  46 gtaacttgattgattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttg 145  Q
    ||||||| || ||||||||||||||||||||| ||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43864160 gtaactttatcgattgtattctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttg 43864061  T
Q  146 gaagagtcttcccactc-ttacattatgttcttcatactttaggaccaaggaaactttcagcgtattcctgtctcaatttttatctctttgcgatggctc 244  Q
    |||||||||||| |||  |||||||| |||||||| |||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||||||||||    
T  43864060 gaagagtcttcctactaattacattaagttcttcaaactttaggaccaaggaaagtttaagcgaatttctgtctcaatttttatctcttcgcgatggctc 43863961  T
Q  245 aaccactatacacactctcgatgttgactgcccatattacatggagccaagtatattccaaattattataaaata 319  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||||  ||||| |||| |||||||||||    
T  43863960 aaccactatacacactctcgatgtttactgcccatattccttggagccaagcctattcaaaatgattataaaata 43863886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 38989109 - 38989233
Alignment:
Q  64 ttctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactct 163  Q
    ||||| |||||||| |||||||  ||||||||| | |||| |||||||| ||| ||||||||||||||||||||| ||| |||||||||||| ||||| |    
T  38989109 ttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaagagtctttccactat 38989208  T
Q  164 tacattatgttcttcatactttagg 188  Q
    |||| |  | |||||||||| ||||    
T  38989209 tacacttagatcttcatactctagg 38989233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 52186779 - 52186946
Alignment:
Q  21 gacaacaaaaatgaagacattatcagtaacttgattgattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattt 120  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||||| | ||| || | |||||  | ||||||||| ||||||||||||| |||||||    
T  52186779 gacaacaaaaatgaagacattatcagtgacttgactgattctgttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcattt 52186878  T
Q  121 tgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcatactttagg 188  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||    
T  52186879 tgtccaaaagatggatcattctctggaggagtcttcccactcttacactaagttcttcatactttagg 52186946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 35968336 - 35968376
Alignment:
Q  94 caaaagaggccgttcaaacttgcattttgtccaaaagatgg 134  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  35968336 caaaacaggtcgttcaaacttgcgttttgtccaaaagatgg 35968376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 5312 - 5418
Alignment:
Q  64 ttctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactct 163  Q
    |||||||||||||| ||||||| || ||| ||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  5312 ttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaagactcttcccactct 5411  T
Q  164 tacatta 170  Q
    |||||||    
T  5412 tacatta 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 476027 - 476161
Alignment:
Q  57 gattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttc 156  Q
    |||||||||||| |||||| | | ||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| | |||||    
T  476027 gattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttc 476126  T
Q  157 ccactcttacattatgttcttcatactttaggacc 191  Q
    |||| |||||| || |||||||| |||||||||||    
T  476127 ccacccttacactaagttcttcaaactttaggacc 476161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 480963 - 481073
Alignment:
Q  81 tccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcat 180  Q
    ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||| ||| ||||||||     
T  480963 tcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaa 481062  T
Q  181 actttaggacc 191  Q
    |||||||||||    
T  481063 actttaggacc 481073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 778336 - 778167
Alignment:
Q  18 aaggacaacaaaaatgaagacattatcagtaacttgattgattgtattctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgca 117  Q
    ||||||||||||||| || |||  |||| | ||||||  |||  | ||||| |||||||| | || || || || || |||||||| || ||||||||||    
T  778336 aaggacaacaaaaataaacacacaatcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgca 778237  T
Q  118 ttttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcatactttag 187  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||||||||||||| |||||||| |||||||    
T  778236 ttttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttag 778167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 1304800 - 1304694
Alignment:
Q  64 ttctcattcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactct 163  Q
    |||||| ||||||| | ||||| || || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| |||| |||||||    
T  1304800 ttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1304701  T
Q  164 tacatta 170  Q
    |||||||    
T  1304700 tacatta 1304694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 1186233 - 1186332
Alignment:
Q  71 tcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 170  Q
    ||||||| | ||||| || || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  1186233 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacatta 1186332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 1204297 - 1204396
Alignment:
Q  71 tcacatagtgtccttcttaaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 170  Q
    ||||||| | ||||| || || || |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  1204297 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacatta 1204396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 5361077 - 5361015
Alignment:
Q  108 caaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 170  Q
    |||||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||| |||||    
T  5361077 caaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcatta 5361015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 13490977 - 13490896
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttcatacttta 186  Q
    ||||||||||  ||||| |||||||||||||  ||| | ||||||| ||||||||| |||||||||  | ||||||||||||    
T  13490977 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatacttta 13490896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 7125963 - 7126036
Alignment:
Q  106 ttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttca 179  Q
    |||||||||| || ||||||||||||||||  ||||| |||||  ||||||| || |||||||||  |||||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttca 7126036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 25601743 - 25601803
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactctta 165  Q
    |||||||||||||||||||||| ||||||||   ||||||||||  || ||||||| ||||    
T  25601743 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 25601803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 33958133 - 33958061
Alignment:
Q  98 agaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 170  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  33958133 agaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 6844163 - 6844223
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactctta 165  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||   ||||||||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactctta 6844223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 32413657 - 32413712
Alignment:
Q  102 gccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    ||||||||||||||||||||||||| ||||||||  ||||| |||||| |||||||    
T  32413657 gccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 9235889 - 9235846
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaa 148  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||    
T  9235889 gttcaaacttgcattctctccaaaagatggaacaatctttggaa 9235846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 6889182 - 6889256
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcttca 179  Q
    ||||||||||||||| | ||||||||||||| |||||| |||||   |||||| || |||| |||| ||||||||    
T  6889182 gttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacccttatattaagttcttca 6889256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 7115588 - 7115536
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    |||||||||||  ||||||||||||||||||  ||||| |||||| |||||||    
T  7115588 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 7120660 - 7120608
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    |||||||||||  ||||||||||||||||||  ||||| |||||| |||||||    
T  7120660 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 7124064 - 7124012
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    |||||||||||  ||||||||||||||||||  ||||| |||||| |||||||    
T  7124064 gttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 7140778 - 7140726
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  7140778 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 7140726  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 8680392 - 8680340
Alignment:
Q  105 gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 157  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  8680392 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 8680340  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 42602935 - 42602903
Alignment:
Q  103 ccgttcaaacttgcattttgtccaaaagatgga 135  Q
    |||||||||||||||| ||||||||||||||||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatgga 42602903  T

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