View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_high_28 (Length: 387)
Name: NF3097_high_28
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 42924744 - 42925109
Alignment:
| Q |
18 |
agtaattgatcgatgctaatatataaactagataggaatctctaaacccgccaaatatgctattactaactttggaagtagtatgaatgaaatttgaaga |
117 |
Q |
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| T |
42924744 |
agtaattgatcgatgctaatatataaactagataggaatctctaaacccgccaaaaatgctattactaactttggaagtagtatgaatgaaatttgaaga |
42924843 |
T |
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| Q |
118 |
agaaattaggagaatatattcattcaataatcaagacttcgtttctttctttcattatttcttgcatatttggattttgttattcctactgtgattggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42924844 |
agaaattaggagaatatattcattcaataatcaagacttcgtttctttctttcattatttcttgcatatttggattttgttattcctactgtgattggtt |
42924943 |
T |
|
| Q |
218 |
agtttcttgaatgatcattttctgcatttcttatttgttgtatgattcagtcttgattttgcttctgcattgcttttctttcaagtttccaattcccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42924944 |
agtttcttgaatgatcattttctgcatttcttatttgttgtatgattcagtcttgattttgcttctgcattgcttttctttcaagtttccaattcccttc |
42925043 |
T |
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| Q |
318 |
aaacaccgtttctttcaatcattttgatttgattctaacatcatcctttatgagcctttgcttctc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925044 |
aaacaccgtttctttcaatcattttgatttgattctaacatcatcctttatgagcctttgcttctc |
42925109 |
T |
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